| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237811921
Identifier: 237811921
GI number: 237811921
Start: 1594088
End: 1594612
Strand: Direct
Name: 237811921
Synonym: GBP346_A1661
Alternate gene names: NA
Gene position: 1594088-1594612 (Clockwise)
Preceding gene: 237811920
Following gene: 237811922
Centisome position: 38.89
GC content: 72.19
Gene sequence:
>525_bases ATGTCGACCTTACAACGAGTGCTTTTCCTGCTGGGCGTCGCGGCGTGGCCGGCTGCCGGCCGGGCCGACACGCTGCTGCC CCGAACCCAGGCCTTCACGGTCAGCGCGCAGATCGTCGCGGGCTGCGGCGTCGCGGGCGGCGGGCCGGCGAGCGGCCTGA ACTTCGGCACGCTCGACTTCGGCGCGCATCCGGCCGTCGCGACGGGGCAGGTGAGCGCGGCCGTCGGCGGCGGCGCGTTG CAGATCGAATGTTCGCCGGGCTCGACGTTGAAGATGACGATCGACGGCGGCGCGAACGCGAGCGCGGGCAACACGCAGCG CAATCTGGCGAGCGGCGGCGCGCGCGTTGCATACCGGTTGTATTCGGACCCGGCGCGCACGCAGGCGATCGCGGTCGGGC AGGCGGTGTCGCTGCCCGTGTCCGGCACGATCACGCTGCCGATCTACGGCGCGCTCACGCTGCCGGGCGGCGGCGCGCCC GCCGGCACGTATACCGATACCGCGCAGGTCACGCTCAGTTATTAA
Upstream 100 bases:
>100_bases CTGAACGTCACGCTCGGCTGGTAAGCGAGCGCGCCGTCCCGTTTGGCCTCGCGGCTCGCGCGCAAGCGGGCGGCGAGGCG GTCCCAGGTTTCCGATCGTC
Downstream 100 bases:
>100_bases TCAATCAGGAATCCGTGATGAAAGTTTCGAGATCGCCCGGCGCGCCGGCGCGCGCGGCAAGGGCGCTGCGCTGCGCGCTG CTCGGCGCGGCCGCCGCCGC
Product: Spore Coat Protein U domain protein
Products: NA
Alternate protein names: Type I Pilus Protein CsuB; Spore Coat Protein U Domain-Contain Protein; Spore Coat U; Type 1 Pili Subunit CsuA/B Protein; Fimbrial Protein
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MSTLQRVLFLLGVAAWPAAGRADTLLPRTQAFTVSAQIVAGCGVAGGGPASGLNFGTLDFGAHPAVATGQVSAAVGGGAL QIECSPGSTLKMTIDGGANASAGNTQRNLASGGARVAYRLYSDPARTQAIAVGQAVSLPVSGTITLPIYGALTLPGGGAP AGTYTDTAQVTLSY
Sequences:
>Translated_174_residues MSTLQRVLFLLGVAAWPAAGRADTLLPRTQAFTVSAQIVAGCGVAGGGPASGLNFGTLDFGAHPAVATGQVSAAVGGGAL QIECSPGSTLKMTIDGGANASAGNTQRNLASGGARVAYRLYSDPARTQAIAVGQAVSLPVSGTITLPIYGALTLPGGGAP AGTYTDTAQVTLSY >Mature_173_residues STLQRVLFLLGVAAWPAAGRADTLLPRTQAFTVSAQIVAGCGVAGGGPASGLNFGTLDFGAHPAVATGQVSAAVGGGALQ IECSPGSTLKMTIDGGANASAGNTQRNLASGGARVAYRLYSDPARTQAIAVGQAVSLPVSGTITLPIYGALTLPGGGAPA GTYTDTAQVTLSY
Specific function: Unknown
COG id: COG5430
COG function: function code S; Uncharacterized secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17049; Mature: 16918
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLQRVLFLLGVAAWPAAGRADTLLPRTQAFTVSAQIVAGCGVAGGGPASGLNFGTLDF CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEECC GAHPAVATGQVSAAVGGGALQIECSPGSTLKMTIDGGANASAGNTQRNLASGGARVAYRL CCCCCEECCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCHHHCCCCCEEEEEE YSDPARTQAIAVGQAVSLPVSGTITLPIYGALTLPGGGAPAGTYTDTAQVTLSY ECCCCHHEEEEECCEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEC >Mature Secondary Structure STLQRVLFLLGVAAWPAAGRADTLLPRTQAFTVSAQIVAGCGVAGGGPASGLNFGTLDF CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEECC GAHPAVATGQVSAAVGGGALQIECSPGSTLKMTIDGGANASAGNTQRNLASGGARVAYRL CCCCCEECCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCHHHCCCCCEEEEEE YSDPARTQAIAVGQAVSLPVSGTITLPIYGALTLPGGGAPAGTYTDTAQVTLSY ECCCCHHEEEEECCEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA