| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237811875
Identifier: 237811875
GI number: 237811875
Start: 1552221
End: 1553225
Strand: Reverse
Name: 237811875
Synonym: GBP346_A1615
Alternate gene names: NA
Gene position: 1553225-1552221 (Counterclockwise)
Preceding gene: 237811877
Following gene: 237811873
Centisome position: 37.9
GC content: 73.23
Gene sequence:
>1005_bases ATGGACGAACGCTGCACGGGCAATCAGCCAGGGCCGACGCGACGGCTCACTTTACCGGAACATTCAGGAGCAGTCCACGC CGCCCCTGCCCGTCGGCCGATCGGACGAGGCGCAGCGATTGCGGCCGTCGCAGGCGAGGACGGAAACCGCGCGTGCGGGC GGCGCAAGCGGCCGCGCGATGCGCGGCGGCACGCGCATCGCGGCGGTGCGCACGCGCCGACGGTGCGATGCGGCGCGCCG CCGATCGTCGGCCGCACTCGCCCGCCGACAAAAACCATCCGCGTCGACCTGCGCGCCGAATCATGCCGGATGCCAGGTTG GATTCGCCGCACGCACGCATGGATCGGCGAGATGCCCGCGCGTACGGATCGACGAGACGCACAGGCGATCGCGCCCGCGC GCCGCCCCGACGTGCCGGGCGCGTACGCGGCCGCGCAGGCGAGCGCGGCGAAGATCAAGGCGGCGGAATCGGAGTTCATG CCGAAGGTGTTCGTGTCCGCGTCGACGCCGTACAACGCCGGGCGCGCGGCAATCAACGCGATCCCGCCCGTCGGCCAGCA GGCGCCGACCGTGAACCTGAACGGCAGCCGCTACGGCGGCGGCGTGTTCGTCGGCGTGACGATTCCGCGGTACGACGTCG GCTTGCGCTCGGCCGTGCTGATGCAGGCGCGCAACGACGCCGGCAGCGCATCCGCGCGGCTCGAGCGCACGAAGGACGAA GGACGAAGCGGTCAGGCAGATCGTCGCCGGGCAGAACGCGCTGCGCGCGAGTCTCGCGTCGCACGATGCGGCGGCGACGC TCGTCGACGCCGCGCAGACCACTGCGACGCCGCGCTCGACGCGTACCGGCACGGCGTCGGCTCGCTCACCGACGCGATGC TCGCGCGGAACGACCTGCTCGCCGCGCAAACCGCGTACGCGGACAGCTACGGCACCGCGCTGTCGGCCGCGGCGTCGCCC GCGCTCGCGACGGGGACGGTCGCGCAGACGCCGGAGGCGCAATGA
Upstream 100 bases:
>100_bases CGAAAGTGCCTTCGCACGCCGGCGGCCGATGCCGACGACACGGCGGGCCACGCGTGGGAAGCGAGCGCGCGAACGGCTGG AGCCGACGCGCGGCTCCCGG
Downstream 100 bases:
>100_bases TGCATCGGCGGAACGACCGAGCGCGGCTGTCGCTGTTGCCGTTGCCGTTGCCGCCGCTTTTACCGTTGCCCGATCAGCCC CGCGCGCGCCGGCCGCGGCG
Product: outer membrane efflux protein
Products: NA
Alternate protein names: Outer Membrane Efflux Family Protein
Number of amino acids: Translated: 334; Mature: 334
Protein sequence:
>334_residues MDERCTGNQPGPTRRLTLPEHSGAVHAAPARRPIGRGAAIAAVAGEDGNRACGRRKRPRDARRHAHRGGAHAPTVRCGAP PIVGRTRPPTKTIRVDLRAESCRMPGWIRRTHAWIGEMPARTDRRDAQAIAPARRPDVPGAYAAAQASAAKIKAAESEFM PKVFVSASTPYNAGRAAINAIPPVGQQAPTVNLNGSRYGGGVFVGVTIPRYDVGLRSAVLMQARNDAGSASARLERTKDE GRSGQADRRRAERAARESRVARCGGDARRRRADHCDAALDAYRHGVGSLTDAMLARNDLLAAQTAYADSYGTALSAAASP ALATGTVAQTPEAQ
Sequences:
>Translated_334_residues MDERCTGNQPGPTRRLTLPEHSGAVHAAPARRPIGRGAAIAAVAGEDGNRACGRRKRPRDARRHAHRGGAHAPTVRCGAP PIVGRTRPPTKTIRVDLRAESCRMPGWIRRTHAWIGEMPARTDRRDAQAIAPARRPDVPGAYAAAQASAAKIKAAESEFM PKVFVSASTPYNAGRAAINAIPPVGQQAPTVNLNGSRYGGGVFVGVTIPRYDVGLRSAVLMQARNDAGSASARLERTKDE GRSGQADRRRAERAARESRVARCGGDARRRRADHCDAALDAYRHGVGSLTDAMLARNDLLAAQTAYADSYGTALSAAASP ALATGTVAQTPEAQ >Mature_334_residues MDERCTGNQPGPTRRLTLPEHSGAVHAAPARRPIGRGAAIAAVAGEDGNRACGRRKRPRDARRHAHRGGAHAPTVRCGAP PIVGRTRPPTKTIRVDLRAESCRMPGWIRRTHAWIGEMPARTDRRDAQAIAPARRPDVPGAYAAAQASAAKIKAAESEFM PKVFVSASTPYNAGRAAINAIPPVGQQAPTVNLNGSRYGGGVFVGVTIPRYDVGLRSAVLMQARNDAGSASARLERTKDE GRSGQADRRRAERAARESRVARCGGDARRRRADHCDAALDAYRHGVGSLTDAMLARNDLLAAQTAYADSYGTALSAAASP ALATGTVAQTPEAQ
Specific function: Unknown
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35334; Mature: 35334
Theoretical pI: Translated: 11.57; Mature: 11.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDERCTGNQPGPTRRLTLPEHSGAVHAAPARRPIGRGAAIAAVAGEDGNRACGRRKRPRD CCCCCCCCCCCCCEEEECCCCCCCEECCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCHH ARRHAHRGGAHAPTVRCGAPPIVGRTRPPTKTIRVDLRAESCRMPGWIRRTHAWIGEMPA HHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCC RTDRRDAQAIAPARRPDVPGAYAAAQASAAKIKAAESEFMPKVFVSASTPYNAGRAAINA CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHC IPPVGQQAPTVNLNGSRYGGGVFVGVTIPRYDVGLRSAVLMQARNDAGSASARLERTKDE CCCCCCCCCEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHC GRSGQADRRRAERAARESRVARCGGDARRRRADHCDAALDAYRHGVGSLTDAMLARNDLL CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH AAQTAYADSYGTALSAAASPALATGTVAQTPEAQ HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MDERCTGNQPGPTRRLTLPEHSGAVHAAPARRPIGRGAAIAAVAGEDGNRACGRRKRPRD CCCCCCCCCCCCCEEEECCCCCCCEECCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCHH ARRHAHRGGAHAPTVRCGAPPIVGRTRPPTKTIRVDLRAESCRMPGWIRRTHAWIGEMPA HHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCC RTDRRDAQAIAPARRPDVPGAYAAAQASAAKIKAAESEFMPKVFVSASTPYNAGRAAINA CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHC IPPVGQQAPTVNLNGSRYGGGVFVGVTIPRYDVGLRSAVLMQARNDAGSASARLERTKDE CCCCCCCCCEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHC GRSGQADRRRAERAARESRVARCGGDARRRRADHCDAALDAYRHGVGSLTDAMLARNDLL CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH AAQTAYADSYGTALSAAASPALATGTVAQTPEAQ HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA