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The map label for this gene is rci [H]

Identifier: 237811823

GI number: 237811823

Start: 1501156

End: 1502175

Strand: Reverse

Name: rci [H]

Synonym: GBP346_A1562

Alternate gene names: 237811823

Gene position: 1502175-1501156 (Counterclockwise)

Preceding gene: 237811824

Following gene: 237811821

Centisome position: 36.65

GC content: 57.84

Gene sequence:

>1020_bases
ATGGCGACTGTAAGCAAACGCGAAAATGGATGGATGTGCCAAGTTCGCAAAAAGGGATACCCCGCCACTTCAAAGAAGTT
TGCGACCAAGATTGAAGCTCTTGCATGGGGTCGCATGATCGAATCGGAGATGGATCGCGGACTATTCGCGAGCCGTAACG
ATGCCGAGCGAACAACCCTCGCGGACTTACTCGATCGGTATACCCGTGACATATCCCCGACCAAACGCAGCGGCGGCAGT
GACATGGGGCGCGCGGGGAAGCTCAAAAAACAACTCGGTGCGTACAAGCTGACCGCACTGACCGCCTCCCATCTCGTCGA
CTACCGAGACGCGCGACTTAAAGAAGTGTCACCGCAAACCGTAGTCCATGAATTGAATCTCTTGAATCGCGTATTGACAT
TGGCGACCCGTGAGTGGGGCATCGTCCTGCCCGCTGGCGTTCCGAAGGTCATCAAGCCCCGGAAACCGCAAGGCCGGGAT
AGGCGGCTGCACCCGGATGAAATTCAGGCCATCATCGACGCGACTGAATCACTTGACCTGCGAGACTTCATCCGGCTCGC
CGTGGCGACCGGCATGCGGCGCGGTGAACTCGCGTCTCTGCGATGGGAGAGCATCGACCTTGCGCGACGCACTGCGCATC
TACCGGTAACGAAAACGGACTCACCGCGTACTGTGCCGCTATCCACCGATGCCGTAACCATCCTACATGCTCGGAGGGTA
GCGCAGTGCGTCGCACCATTCAACGTGACGTCTGACGCCCTTACGCGGGCATTCTGCCGTGCTGTGCAGCGTGCGAGAAA
ACTCTACGTTTCGACGTGCGCGGTACTGGATCGCCCCATCGATTCGAACTGGCTCATTGGCATCCGATTGCACGACCTCC
GACACGAAGCCACAAGCCGCCTATTCGAGAAAGGTCTCAATCCGATGGAAGTTGCCAGCATCACCGGCCATAAGACGCTG
AGCATGCTCCAACGCTACACGCATCTGCGCGCCGAGGATTTGGCGAAGAAGCTAGGTTAA

Upstream 100 bases:

>100_bases
GTTGCTGCTGGGCGGCAAACCCTTGCAGGGCTTGCCTTCTATCCGACTGAGACCAATCTAGTCACACTCCAGTCACACCG
GCGACCTCCTTGGAGGCCGT

Downstream 100 bases:

>100_bases
GGAGACTTTCGGGGCCGCCCTGTCTGCTTCCGGGGCGGCTCTTGCATCTCTGGTGCGAACGGAGCCTCCTTCGACAACGG
ATGACTGGCCCAATTCTTCG

Product: site-specific recombinase, phage integrase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MATVSKRENGWMCQVRKKGYPATSKKFATKIEALAWGRMIESEMDRGLFASRNDAERTTLADLLDRYTRDISPTKRSGGS
DMGRAGKLKKQLGAYKLTALTASHLVDYRDARLKEVSPQTVVHELNLLNRVLTLATREWGIVLPAGVPKVIKPRKPQGRD
RRLHPDEIQAIIDATESLDLRDFIRLAVATGMRRGELASLRWESIDLARRTAHLPVTKTDSPRTVPLSTDAVTILHARRV
AQCVAPFNVTSDALTRAFCRAVQRARKLYVSTCAVLDRPIDSNWLIGIRLHDLRHEATSRLFEKGLNPMEVASITGHKTL
SMLQRYTHLRAEDLAKKLG

Sequences:

>Translated_339_residues
MATVSKRENGWMCQVRKKGYPATSKKFATKIEALAWGRMIESEMDRGLFASRNDAERTTLADLLDRYTRDISPTKRSGGS
DMGRAGKLKKQLGAYKLTALTASHLVDYRDARLKEVSPQTVVHELNLLNRVLTLATREWGIVLPAGVPKVIKPRKPQGRD
RRLHPDEIQAIIDATESLDLRDFIRLAVATGMRRGELASLRWESIDLARRTAHLPVTKTDSPRTVPLSTDAVTILHARRV
AQCVAPFNVTSDALTRAFCRAVQRARKLYVSTCAVLDRPIDSNWLIGIRLHDLRHEATSRLFEKGLNPMEVASITGHKTL
SMLQRYTHLRAEDLAKKLG
>Mature_338_residues
ATVSKRENGWMCQVRKKGYPATSKKFATKIEALAWGRMIESEMDRGLFASRNDAERTTLADLLDRYTRDISPTKRSGGSD
MGRAGKLKKQLGAYKLTALTASHLVDYRDARLKEVSPQTVVHELNLLNRVLTLATREWGIVLPAGVPKVIKPRKPQGRDR
RLHPDEIQAIIDATESLDLRDFIRLAVATGMRRGELASLRWESIDLARRTAHLPVTKTDSPRTVPLSTDAVTILHARRVA
QCVAPFNVTSDALTRAFCRAVQRARKLYVSTCAVLDRPIDSNWLIGIRLHDLRHEATSRLFEKGLNPMEVASITGHKTLS
MLQRYTHLRAEDLAKKLG

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=226, Percent_Identity=28.3185840707965, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38093; Mature: 37961

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATVSKRENGWMCQVRKKGYPATSKKFATKIEALAWGRMIESEMDRGLFASRNDAERTTL
CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
ADLLDRYTRDISPTKRSGGSDMGRAGKLKKQLGAYKLTALTASHLVDYRDARLKEVSPQT
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHH
VVHELNLLNRVLTLATREWGIVLPAGVPKVIKPRKPQGRDRRLHPDEIQAIIDATESLDL
HHHHHHHHHHHHHHHHCCCCEEECCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH
RDFIRLAVATGMRRGELASLRWESIDLARRTAHLPVTKTDSPRTVPLSTDAVTILHARRV
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHH
AQCVAPFNVTSDALTRAFCRAVQRARKLYVSTCAVLDRPIDSNWLIGIRLHDLRHEATSR
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHH
LFEKGLNPMEVASITGHKTLSMLQRYTHLRAEDLAKKLG
HHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATVSKRENGWMCQVRKKGYPATSKKFATKIEALAWGRMIESEMDRGLFASRNDAERTTL
CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
ADLLDRYTRDISPTKRSGGSDMGRAGKLKKQLGAYKLTALTASHLVDYRDARLKEVSPQT
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHH
VVHELNLLNRVLTLATREWGIVLPAGVPKVIKPRKPQGRDRRLHPDEIQAIIDATESLDL
HHHHHHHHHHHHHHHHCCCCEEECCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH
RDFIRLAVATGMRRGELASLRWESIDLARRTAHLPVTKTDSPRTVPLSTDAVTILHARRV
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHH
AQCVAPFNVTSDALTRAFCRAVQRARKLYVSTCAVLDRPIDSNWLIGIRLHDLRHEATSR
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHH
LFEKGLNPMEVASITGHKTLSMLQRYTHLRAEDLAKKLG
HHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]