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The map label for this gene is yhjC [H]

Identifier: 237811722

GI number: 237811722

Start: 1404569

End: 1405468

Strand: Reverse

Name: yhjC [H]

Synonym: GBP346_A1460

Alternate gene names: 237811722

Gene position: 1405468-1404569 (Counterclockwise)

Preceding gene: 237811724

Following gene: 237811721

Centisome position: 34.29

GC content: 69.67

Gene sequence:

>900_bases
ATGGACCGTATTGATCTCTTTCGCGTGTTCGCGCGCGTCGTCGAATGCGCGAACTTCACGCGCGCGGCCGACACGCTCGG
CATGCCGCGCTCGTCGGTTTCGGCGGCGATTCAGGAACTGGAGGGCCGCGTCGGCGCGCGGCTCCTGCATCGCACGACCC
GCAAGGTGACGCCGACGCAGGACGGCGCCGCGCTCTACGAGCGCTGCCTGCGCCTCATCGCGGACGTCGAGGAAACCGAA
AACCTGTTCCGCCATTCGATCGTCGGGCCGAGCGGCACGCTGCGCGCCGACATGCCGGGGCGCATCGGCCGCCTGATCGT
CGCGCCCGCGCTGCCCGAGTTTCTCGAGCGCTACCCGCAAATCAGCGTCGAGCTCGGCGTCACCGATCGCGCGGTGAATC
TGATCGAGGAGCGCGTCGATTGCGTGCTGCGCGTCGGCACGCTGAGCGATTCGGGCCTCGTCGCGCGCGCGATCGGCGAT
CTGCCGCTCATCAACGTCGCGAGCCCCGCGTATCTCGCGCGCCACGGCGTGCCGCGCACGCCCGCCGATCTCGAGCGCCA
CCGGCCCGTCAATTACGCGTCGCCGTCGAACGGGCGCGTCGCGCCTTGGGAATGGGTCGAGGGCGACGAAGTGAAGCGTG
TCGCGCTGCGCGCACGCGTGACCGTCAACAGCGCGGAGGCGTACATCGCGTGCTGCCTGGCGGGGCTCGGCCTGATCCAG
ATTCCCGCGTACGACGTGAACGCGCACCTGCGCGCGGGCGAACTCGTCGAAGTGCTGCCGGACCATCGCGCGGCGCCGAT
GCCGATGACGCTGCTGTATCCGCACCGGCAGCATCTGTCGCGGCGTTTTCAGGTGTTCGCGGAGTGGCTCGAGGCGCTGC
TGCGGGCGAAGGTACTGTAG

Upstream 100 bases:

>100_bases
GCCGCGATGACTCCGCTTGCGTCCCCACCCGCGCGCCCTGCGCCCGCCGCCTCCGATGCGGCGGGCAGGTCGCCCCGTCC
GCGCCGCCGAGGAGCCGCCG

Downstream 100 bases:

>100_bases
GCGCGCCGGAACGCGCGCCCCGCTTCGATCGCGCCGCGCGCGCCTCAGGCGGCCGGCGGCGCGGCCGGGCGGCGACGTCG
AACGAAAAATATTACCCGGG

Product: LysR substrate binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAALYERCLRLIADVEETE
NLFRHSIVGPSGTLRADMPGRIGRLIVAPALPEFLERYPQISVELGVTDRAVNLIEERVDCVLRVGTLSDSGLVARAIGD
LPLINVASPAYLARHGVPRTPADLERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVTVNSAEAYIACCLAGLGLIQ
IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLRAKVL

Sequences:

>Translated_299_residues
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAALYERCLRLIADVEETE
NLFRHSIVGPSGTLRADMPGRIGRLIVAPALPEFLERYPQISVELGVTDRAVNLIEERVDCVLRVGTLSDSGLVARAIGD
LPLINVASPAYLARHGVPRTPADLERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVTVNSAEAYIACCLAGLGLIQ
IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLRAKVL
>Mature_299_residues
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAALYERCLRLIADVEETE
NLFRHSIVGPSGTLRADMPGRIGRLIVAPALPEFLERYPQISVELGVTDRAVNLIEERVDCVLRVGTLSDSGLVARAIGD
LPLINVASPAYLARHGVPRTPADLERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVTVNSAEAYIACCLAGLGLIQ
IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLRAKVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=40.6779661016949, Blast_Score=238, Evalue=5e-64,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=32.9896907216495, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1789639, Length=287, Percent_Identity=31.7073170731707, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1787589, Length=284, Percent_Identity=31.3380281690141, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=29.6551724137931, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=26.7123287671233, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI87081978, Length=284, Percent_Identity=31.3380281690141, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1788481, Length=304, Percent_Identity=26.3157894736842, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788706, Length=191, Percent_Identity=28.2722513089005, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789173, Length=191, Percent_Identity=26.1780104712042, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33114; Mature: 33114

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGAALYERCLRLIADVEETENLFRHSIVGPSGTLRADMPGRIGRLIVAPALPEFLERYPQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHEEEHHHHHHHHHHCCC
ISVELGVTDRAVNLIEERVDCVLRVGTLSDSGLVARAIGDLPLINVASPAYLARHGVPRT
EEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEECCCHHHHHHCCCCCC
PADLERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVTVNSAEAYIACCLAGLGLIQ
CHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEECCHHHHHHHHHHCCCEEE
IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLRAKVL
ECCCCCCCCCCCCHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGAALYERCLRLIADVEETENLFRHSIVGPSGTLRADMPGRIGRLIVAPALPEFLERYPQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHEEEHHHHHHHHHHCCC
ISVELGVTDRAVNLIEERVDCVLRVGTLSDSGLVARAIGDLPLINVASPAYLARHGVPRT
EEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEECCCHHHHHHCCCCCC
PADLERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVTVNSAEAYIACCLAGLGLIQ
CHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEECCHHHHHHHHHHCCCEEE
IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLRAKVL
ECCCCCCCCCCCCHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]