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The map label for this gene is cbaB [H]

Identifier: 237811637

GI number: 237811637

Start: 1322043

End: 1322600

Strand: Direct

Name: cbaB [H]

Synonym: GBP346_A1374

Alternate gene names: 237811637

Gene position: 1322043-1322600 (Clockwise)

Preceding gene: 237811636

Following gene: 237811638

Centisome position: 32.26

GC content: 64.52

Gene sequence:

>558_bases
ATGCCAGACCGTCTCGACGGCGCGCAGCTCGCGGCCCGGATCGAGCGCAGGTGGGCGATCCTGGCCGTCGGCCTGATGAT
CGTCCTCGTCGCCATGATGGTGTACACCGGCCTGCACTGGACGATGATGCCGCCGTCGCGCGTCGAGACGATCGACCCGA
CGACGCTGCACGTTTCCGGCGAATTCGTCGAGAGCAACCTCGGCACCGCGCGCGAGCCGGACGGCTCGGTCACGGTGCGC
GTGATCGGCCAGCAGTATTCGTTCACGCCGCAGTGCATCCTCGTGCCGGCGAACACGCCCGTCACGTTCCGCGCGACGAG
CGCGGACGTCGTGCACGGCTTTCTCATCACCGACACCAACATCAATTCGATGCTCGAACCCGGCTACGTCGCGACGTTCA
GGACGACGTTCGACAAGCCGAGGGATCACCTGATGCCGTGCCACGAATATTGCGGCACGGGCCACGAGGGGATGTGGGCG
CACGTCAAGGTCATTGACCGTGCGGAATTCGACAAACTGGCGTCCAGCGCGCGGAGACTGAGCTGTGTTAAAGAATAA

Upstream 100 bases:

>100_bases
GACCGCGATCGTGATCGCGCTGTGGTTCGCCTTTTACTTTCTCGTCTTCCTGCCTCGCGGCGTGATCCAATAAAAAGCGG
CTCCCATGTCCAAACAACCT

Downstream 100 bases:

>100_bases
TCGACTGGTGCTCGCGCACTTCTGGCTCGCGTTCGCGGTCTTCGGCGTCGCGCTGTTGCTCGGCGCGTGGCAGATGCTCG
CGCGCAGCCCGCTGCATCCG

Product: cytochrome c oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome c ba(3) subunit II; Cytochrome c oxidase polypeptide II; Cytochrome cba3 subunit 2 [H]

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MPDRLDGAQLAARIERRWAILAVGLMIVLVAMMVYTGLHWTMMPPSRVETIDPTTLHVSGEFVESNLGTAREPDGSVTVR
VIGQQYSFTPQCILVPANTPVTFRATSADVVHGFLITDTNINSMLEPGYVATFRTTFDKPRDHLMPCHEYCGTGHEGMWA
HVKVIDRAEFDKLASSARRLSCVKE

Sequences:

>Translated_185_residues
MPDRLDGAQLAARIERRWAILAVGLMIVLVAMMVYTGLHWTMMPPSRVETIDPTTLHVSGEFVESNLGTAREPDGSVTVR
VIGQQYSFTPQCILVPANTPVTFRATSADVVHGFLITDTNINSMLEPGYVATFRTTFDKPRDHLMPCHEYCGTGHEGMWA
HVKVIDRAEFDKLASSARRLSCVKE
>Mature_184_residues
PDRLDGAQLAARIERRWAILAVGLMIVLVAMMVYTGLHWTMMPPSRVETIDPTTLHVSGEFVESNLGTAREPDGSVTVRV
IGQQYSFTPQCILVPANTPVTFRATSADVVHGFLITDTNINSMLEPGYVATFRTTFDKPRDHLMPCHEYCGTGHEGMWAH
VKVIDRAEFDKLASSARRLSCVKE

Specific function: Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) [H]

COG id: COG1622

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 2

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase subunit 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001505
- InterPro:   IPR008972
- InterPro:   IPR015964
- InterPro:   IPR002429
- InterPro:   IPR015209 [H]

Pfam domain/function: PF00116 COX2; PF09125 COX2-transmemb [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 20563; Mature: 20432

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS00078 COX2 ; PS50857 COX2_CUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDRLDGAQLAARIERRWAILAVGLMIVLVAMMVYTGLHWTMMPPSRVETIDPTTLHVSG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEEC
EFVESNLGTAREPDGSVTVRVIGQQYSFTPQCILVPANTPVTFRATSADVVHGFLITDTN
HHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEECCHHHEEEEEEECCC
INSMLEPGYVATFRTTFDKPRDHLMPCHEYCGTGHEGMWAHVKVIDRAEFDKLASSARRL
HHHHCCCCEEEEEEECCCCCHHHCCCCHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHH
SCVKE
HHCCC
>Mature Secondary Structure 
PDRLDGAQLAARIERRWAILAVGLMIVLVAMMVYTGLHWTMMPPSRVETIDPTTLHVSG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEEC
EFVESNLGTAREPDGSVTVRVIGQQYSFTPQCILVPANTPVTFRATSADVVHGFLITDTN
HHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEECCHHHEEEEEEECCC
INSMLEPGYVATFRTTFDKPRDHLMPCHEYCGTGHEGMWAHVKVIDRAEFDKLASSARRL
HHHHCCCCEEEEEEECCCCCHHHCCCCHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHH
SCVKE
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7657607; 10775261 [H]