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The map label for this gene is degU [H]

Identifier: 237811617

GI number: 237811617

Start: 1297850

End: 1298941

Strand: Reverse

Name: degU [H]

Synonym: GBP346_A1349

Alternate gene names: 237811617

Gene position: 1298941-1297850 (Counterclockwise)

Preceding gene: 237811618

Following gene: 237811616

Centisome position: 31.69

GC content: 64.1

Gene sequence:

>1092_bases
ATGCGGAGATGCCGGAGGACGCGACGCCCGCCCAGCCGCACTTCCACTAAAGCCCGCCCAGCGCCGCGCAGTCAGGCGCG
GGCGCACCGCCGAAGGCCGCCTCGAGGTTCCGCTCGACGCGGCCTTCGCGTTTTGGTTTGTCTGAATTTTTCTTATGACT
TTCAGCTAGGCCGACATTTTGTAATGTCTTTGCCATTATTGAGGAGATGGCACTCGTCGTTTCTCGATCAATCGGATAAG
CGGAGGCAAAACATGAGGTTTCTGGTGCTCAATTCGGACGCAGAGCGTCGCGACGGCTTGAAAACCCTGCTGCGTCAAAT
CGACCGACATGCCGGCTACAACGACGCCAAGGACTGGCGGCAGGCACAACGGCTCATCAAGCAGCAGAGCTTCGACTTGA
TCGTGGTCGACTGGCAGGACATCAAGCGCCTCGGAGATCTGCACGCGCTTTGCCAAGCTTGCGCGCCCACGCCCGTCGCG
GCGCTCGTCGACGACGCATCGCCCGTGCATGCGCAAGCGCTCTTCGAAGCCGGTGTGCTTGGCGTCATTTCACGCACGAC
GCGCCCGCACCTCATCGTTCGCGCACTCGAAATGGTGTTGCTCGGCGGGCACTACGTGCCGCCGAGCGCGCTCAACCTCA
CCGAGCCGGCGGCGCGCGCGAGGGACGGCCGCGTCGAAGCGATTGTGAGCCAGTTGCCGCGCAGGAAGCGCTCGCCGTGC
AGTTTGCTGTCGCCGCGCCAGGCGCAGATCATGCGGTTCGTTCACATGGGCAGCACCAACAAGATGATCGCGCGCACGCT
CGGCATCAGCGAAGGCACGGTCAAGATCCATCTGGCCAGCATCTTCCAGCAGTTGGGCGCGACAAATCGCGCCGCCGCGG
TCGCGATCTACAACGGCTGGCTGCCGCCGCACCTCGAAGTGCTGCTCTCCGCACGCGAGACCTCGCCGAAACCCGTACAC
GGTGCGACCGGCCCCGTGCCGCTGCGTCCGGCGAAATCGCGGCATCCGTACCCGCTCGCCGCCGAAAACGAATCGTCTGC
CCAGCCGCTCATCGCGGCTGAACCGCGCACGCCGTTCAAGGCGAACGAATAG

Upstream 100 bases:

>100_bases
GGCGTGACCGACATTCGCCGCCACGCCGGCCGGTTCGAACCCGAATATTGCGACGATTGCGGCGTTCCGTTGTACGCAGA
CCCGCTCGGCGAAATCGTCC

Downstream 100 bases:

>100_bases
CCGGTAAAACCCGCGTAGAGGGTGAATCCATTCCCATCTTTTGTATTCAACGAGTAATATAAAAACATGGGTTTCCTCTA
CACGCCGCTTCCGTTCTGGA

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MRRCRRTRRPPSRTSTKARPAPRSQARAHRRRPPRGSARRGLRVLVCLNFSYDFQLGRHFVMSLPLLRRWHSSFLDQSDK
RRQNMRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVA
ALVDDASPVHAQALFEAGVLGVISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPC
SLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWLPPHLEVLLSARETSPKPVH
GATGPVPLRPAKSRHPYPLAAENESSAQPLIAAEPRTPFKANE

Sequences:

>Translated_363_residues
MRRCRRTRRPPSRTSTKARPAPRSQARAHRRRPPRGSARRGLRVLVCLNFSYDFQLGRHFVMSLPLLRRWHSSFLDQSDK
RRQNMRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVA
ALVDDASPVHAQALFEAGVLGVISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPC
SLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWLPPHLEVLLSARETSPKPVH
GATGPVPLRPAKSRHPYPLAAENESSAQPLIAAEPRTPFKANE
>Mature_363_residues
MRRCRRTRRPPSRTSTKARPAPRSQARAHRRRPPRGSARRGLRVLVCLNFSYDFQLGRHFVMSLPLLRRWHSSFLDQSDK
RRQNMRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVA
ALVDDASPVHAQALFEAGVLGVISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPC
SLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGWLPPHLEVLLSARETSPKPVH
GATGPVPLRPAKSRHPYPLAAENESSAQPLIAAEPRTPFKANE

Specific function: Regulating factor for the production of extracellular proteases. The N-terminal region acts as an inhibitor, whereas the C-terminal region carries enhancing activity [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 40700; Mature: 40700

Theoretical pI: Translated: 11.93; Mature: 11.93

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRCRRTRRPPSRTSTKARPAPRSQARAHRRRPPRGSARRGLRVLVCLNFSYDFQLGRHF
CCHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCHHHHHHH
VMSLPLLRRWHSSFLDQSDKRRQNMRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWR
HHHHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
QAQRLIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVL
HHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHH
GVISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPC
HHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCC
SLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGW
CCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCEEEEEECCC
LPPHLEVLLSARETSPKPVHGATGPVPLRPAKSRHPYPLAAENESSAQPLIAAEPRTPFK
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
ANE
CCC
>Mature Secondary Structure
MRRCRRTRRPPSRTSTKARPAPRSQARAHRRRPPRGSARRGLRVLVCLNFSYDFQLGRHF
CCHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCHHHHHHH
VMSLPLLRRWHSSFLDQSDKRRQNMRFLVLNSDAERRDGLKTLLRQIDRHAGYNDAKDWR
HHHHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
QAQRLIKQQSFDLIVVDWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVL
HHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHH
GVISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPC
HHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCC
SLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVAIYNGW
CCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCEEEEEECCC
LPPHLEVLLSARETSPKPVHGATGPVPLRPAKSRHPYPLAAENESSAQPLIAAEPRTPFK
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
ANE
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7765823 [H]