| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is 229918753
Identifier: 229918753
GI number: 229918753
Start: 2998406
End: 2999389
Strand: Direct
Name: 229918753
Synonym: EAT1b_3042
Alternate gene names: NA
Gene position: 2998406-2999389 (Clockwise)
Preceding gene: 229918752
Following gene: 229918754
Centisome position: 99.95
GC content: 54.37
Gene sequence:
>984_bases ATGAAAATCGTTTGGTTAGGAGACGTCCACATCCGAGGCAAGAACCCCCGGAACCGGACGGACGACTACAAAGAAGCACT GAAGACGAAACTGCGCGAGATCTTCAAGATTGCCGAGTTCAACAAGGCGGAAGCCATCCTATGTGCGGGAGACATCTTCG ACCGCCCGGAAGTCACAAACAGTGTTTTGCTGGAGTTCGCGGAAGTCTTCATGGAAAACAAAATTCCGTTTTATACGACA GCTGGAAATCATGACGTGTACAGCTACAACTTGGACACCTACTGGCGCACATCGCTCCGCGTGCTCGAATGGCTCGTCCC GAACTTCACAGTCATCAACGATCCGAAGGAGAACTTGATGCTGAAGGAAGGGACGCAAGAAGTGGCCGTCAGCTTCCAGC CGTATTCCCACAACATCGACAAGGACGGTTACGGGTACAGCCCGGGGAACCCGGCGAAAGATTGCTTTAAGATCCATGTC GCCCACGGGATGCTGCTCGATCACGATCCGAAAGTCTTCGACCGTTACACCTACGTCGGGACCGTCCAAACGGAAGCGGA CCTGGTGCTTTCCGGTCACGATCACCTGGGCTTCGGTGTCTACGAACGTTCAGACGGCAAAGTCTTCATGAACTGCGGCG CGATTTGTCGCCTGTCAGCAAGCGAGGCAGAAGTCGCCCGTTCGATCCAGGTCGCACTTATCACGGTCGAGGACGGAACG CTTCAGCCGATTGAATTAATCGACTTGCGAAGTGCCCAGCCCGGCAAGGACATCCTGGACCGGACCCAAATCGAAGCGAA CGCGAAACGACAGTATGCGATGGAAGAGTTCGCGGCCTTGATTCAGACCGACGACGGGAGCACGACGGCCGTCGACCTTG AAGCCATCATTCAAAACATCGCAGAGAAGGAAGGCTATGCACCGGAAGTCGTCCAGATGGCACTCGATAAGATTCAAGAG AAGAAGGAGGAAATCCACGCATGA
Upstream 100 bases:
>100_bases TAGTCCGAATTGGTTTGAAGAGCTAATGTTTTCGAATTTCTTGGATCAGTTTTACAAATTAGATAGACAAATATATGTCA TGGCATAAGGAGGGCGCGAT
Downstream 100 bases:
>100_bases TCCGTATCGTAGACGACAAGACGAACGAAGTGAAAGCCGAGATGAAAGAGATGCAACGTCATATTGAAGCTGAACTTAGA GACATAAAAAAGAAAAAACG
Product: metallophosphoesterase
Products: NA
Alternate protein names: DNA Repair Exonuclease; Ser/Thr Protein Phosphatase Family Protein; Exonuclease SbcD; Phosphoesterase
Number of amino acids: Translated: 327; Mature: 327
Protein sequence:
>327_residues MKIVWLGDVHIRGKNPRNRTDDYKEALKTKLREIFKIAEFNKAEAILCAGDIFDRPEVTNSVLLEFAEVFMENKIPFYTT AGNHDVYSYNLDTYWRTSLRVLEWLVPNFTVINDPKENLMLKEGTQEVAVSFQPYSHNIDKDGYGYSPGNPAKDCFKIHV AHGMLLDHDPKVFDRYTYVGTVQTEADLVLSGHDHLGFGVYERSDGKVFMNCGAICRLSASEAEVARSIQVALITVEDGT LQPIELIDLRSAQPGKDILDRTQIEANAKRQYAMEEFAALIQTDDGSTTAVDLEAIIQNIAEKEGYAPEVVQMALDKIQE KKEEIHA
Sequences:
>Translated_327_residues MKIVWLGDVHIRGKNPRNRTDDYKEALKTKLREIFKIAEFNKAEAILCAGDIFDRPEVTNSVLLEFAEVFMENKIPFYTT AGNHDVYSYNLDTYWRTSLRVLEWLVPNFTVINDPKENLMLKEGTQEVAVSFQPYSHNIDKDGYGYSPGNPAKDCFKIHV AHGMLLDHDPKVFDRYTYVGTVQTEADLVLSGHDHLGFGVYERSDGKVFMNCGAICRLSASEAEVARSIQVALITVEDGT LQPIELIDLRSAQPGKDILDRTQIEANAKRQYAMEEFAALIQTDDGSTTAVDLEAIIQNIAEKEGYAPEVVQMALDKIQE KKEEIHA >Mature_327_residues MKIVWLGDVHIRGKNPRNRTDDYKEALKTKLREIFKIAEFNKAEAILCAGDIFDRPEVTNSVLLEFAEVFMENKIPFYTT AGNHDVYSYNLDTYWRTSLRVLEWLVPNFTVINDPKENLMLKEGTQEVAVSFQPYSHNIDKDGYGYSPGNPAKDCFKIHV AHGMLLDHDPKVFDRYTYVGTVQTEADLVLSGHDHLGFGVYERSDGKVFMNCGAICRLSASEAEVARSIQVALITVEDGT LQPIELIDLRSAQPGKDILDRTQIEANAKRQYAMEEFAALIQTDDGSTTAVDLEAIIQNIAEKEGYAPEVVQMALDKIQE KKEEIHA
Specific function: Unknown
COG id: COG0420
COG function: function code L; DNA repair exonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.1.11.-
Molecular weight: Translated: 36912; Mature: 36912
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIVWLGDVHIRGKNPRNRTDDYKEALKTKLREIFKIAEFNKAEAILCAGDIFDRPEVTN CEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHH SVLLEFAEVFMENKIPFYTTAGNHDVYSYNLDTYWRTSLRVLEWLVPNFTVINDPKENLM HHHHHHHHHHHHCCCCEEEECCCCCEEEEECCHHHHHHHHHHHHHCCCCEEECCCHHHCE LKEGTQEVAVSFQPYSHNIDKDGYGYSPGNPAKDCFKIHVAHGMLLDHDPKVFDRYTYVG ECCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHEEEEECCCEEECCCCHHHHCEEEEE TVQTEADLVLSGHDHLGFGVYERSDGKVFMNCGAICRLSASEAEVARSIQVALITVEDGT EEECCCEEEEECCCCCCCCEEECCCCEEEEECCCEEEECCHHHHHHCEEEEEEEEECCCC LQPIELIDLRSAQPGKDILDRTQIEANAKRQYAMEEFAALIQTDDGSTTAVDLEAIIQNI CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEHHHHHHHH AEKEGYAPEVVQMALDKIQEKKEEIHA HHHCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKIVWLGDVHIRGKNPRNRTDDYKEALKTKLREIFKIAEFNKAEAILCAGDIFDRPEVTN CEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHH SVLLEFAEVFMENKIPFYTTAGNHDVYSYNLDTYWRTSLRVLEWLVPNFTVINDPKENLM HHHHHHHHHHHHCCCCEEEECCCCCEEEEECCHHHHHHHHHHHHHCCCCEEECCCHHHCE LKEGTQEVAVSFQPYSHNIDKDGYGYSPGNPAKDCFKIHVAHGMLLDHDPKVFDRYTYVG ECCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHEEEEECCCEEECCCCHHHHCEEEEE TVQTEADLVLSGHDHLGFGVYERSDGKVFMNCGAICRLSASEAEVARSIQVALITVEDGT EEECCCEEEEECCCCCCCCEEECCCCEEEEECCCEEEECCHHHHHHCEEEEEEEEECCCC LQPIELIDLRSAQPGKDILDRTQIEANAKRQYAMEEFAALIQTDDGSTTAVDLEAIIQNI CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEHHHHHHHH AEKEGYAPEVVQMALDKIQEKKEEIHA HHHCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA