| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is aspB [H]
Identifier: 229918734
GI number: 229918734
Start: 2979724
End: 2980911
Strand: Direct
Name: aspB [H]
Synonym: EAT1b_3021
Alternate gene names: 229918734
Gene position: 2979724-2980911 (Clockwise)
Preceding gene: 229918733
Following gene: 229918735
Centisome position: 99.33
GC content: 49.41
Gene sequence:
>1188_bases ATGGAACATCTATTAGCGAAACGTGTAAAACAACTCACGCCATCGACTACCTTGGCGATCACAGCTAAGGCGAAGGCACT GAAAGCTTCAGGCAAAGATGTTATTGGTCTCGGCGCGGGTGAACCTGATTTCAACACACCAGAACGAATCATCGATGCTG CTTGTCAAGCCGCTCGAGATGGAGACACAAAATACACGCCATCTGGCGGGACAGTCGCGTTGAAAGATGCCATCATTGAA AAGACGAAACGCGATAGTGGATTGTCGTTCGAACGCAACGAGGTGATGGTGGCTTCAGGTGCGAAACATGCCCTTTACGC TTTGTTCCAAGCTATTCTAGATGAAGGGGACGAAGTGATTGTCCCAGCCCCATACTGGGTCAGTTACCCGGAACAAATCA AATTGGCGGACGGGGAACCTGTCTTGGTCGACACGAATGAAGAGACATCATTTAAATTGACGCCAACGCAACTCGAGAGT GCGATCACTGCTCGTACGAAGGCAGTCATCTTAAACAGCCCATCCAATCCGACGGGAATGATTTATACGAAAGAAGAGCT ACAGGCACTCGCCGATGTCGTTCTTCGCCACAATCTTCTCGTCGTCAGTGATGAGATTTATGAAAAATTGATTTACGGTG ATGCGTCGTTCGTATCGATTGCGACCCTTCCGAATATGCGTGAACGCACCATCATTATCAATGGTGTCTCGAAATCTCAC GCGATGACAGGTTGGCGAATCGGATATGCCGTTGGGGACGCAAAAATCATCGGGGCGATGACGAACTTGGCCTCACACTC GACATCCAACCCGACATCTGTCGCACAAGCGGCTGCGGTAGAGGCGTACAATGGACCACAAGAAGATGTGGAAATGATGC GTCAATCGTTCGAGGAACGACTTGAAATCGTCTACGACCGTCTCGTCAAAATTCCTGGCATCACGTGTTTGAAGCCGCAA GGTGCATTTTACTTATATGCCAACGCGAAGGTCGCGGCCACAGAGAGTGGCTATGACACCGTCGATGCTTGGTGTGAAGC TGTTCTTGAAGAAGCAAATGTGGCACTCGTGCCTGGTTCTGGCTTCGGACAAGACGATTACGTACGATTATCCTATGCAA CTGAATTAAAACGCGTATTAGAAGCGCTCGATCGAGTAGAAGACTTCGTTACGAAGCGCGCTCGATAA
Upstream 100 bases:
>100_bases ATGCGTCTTATACGTATTCGTACTATACGCTTCAGACCGGAGAATTTATTCGACGGGTCCAATTGACCGATCAAATGTAA TGAATTAGAGGGGGATTATG
Downstream 100 bases:
>100_bases GCGAAAGGATGGAAATGAACATGACAACTATTTCGATTAACCAATTTAAAGACTATGAAGGCCAATCTGTCCGTGTAGGC GCGTGGATTGCCAACAAACG
Product: aminotransferase class I and II
Products: NA
Alternate protein names: AspAT; Transaminase A [H]
Number of amino acids: Translated: 395; Mature: 395
Protein sequence:
>395_residues MEHLLAKRVKQLTPSTTLAITAKAKALKASGKDVIGLGAGEPDFNTPERIIDAACQAARDGDTKYTPSGGTVALKDAIIE KTKRDSGLSFERNEVMVASGAKHALYALFQAILDEGDEVIVPAPYWVSYPEQIKLADGEPVLVDTNEETSFKLTPTQLES AITARTKAVILNSPSNPTGMIYTKEELQALADVVLRHNLLVVSDEIYEKLIYGDASFVSIATLPNMRERTIIINGVSKSH AMTGWRIGYAVGDAKIIGAMTNLASHSTSNPTSVAQAAAVEAYNGPQEDVEMMRQSFEERLEIVYDRLVKIPGITCLKPQ GAFYLYANAKVAATESGYDTVDAWCEAVLEEANVALVPGSGFGQDDYVRLSYATELKRVLEALDRVEDFVTKRAR
Sequences:
>Translated_395_residues MEHLLAKRVKQLTPSTTLAITAKAKALKASGKDVIGLGAGEPDFNTPERIIDAACQAARDGDTKYTPSGGTVALKDAIIE KTKRDSGLSFERNEVMVASGAKHALYALFQAILDEGDEVIVPAPYWVSYPEQIKLADGEPVLVDTNEETSFKLTPTQLES AITARTKAVILNSPSNPTGMIYTKEELQALADVVLRHNLLVVSDEIYEKLIYGDASFVSIATLPNMRERTIIINGVSKSH AMTGWRIGYAVGDAKIIGAMTNLASHSTSNPTSVAQAAAVEAYNGPQEDVEMMRQSFEERLEIVYDRLVKIPGITCLKPQ GAFYLYANAKVAATESGYDTVDAWCEAVLEEANVALVPGSGFGQDDYVRLSYATELKRVLEALDRVEDFVTKRAR >Mature_395_residues MEHLLAKRVKQLTPSTTLAITAKAKALKASGKDVIGLGAGEPDFNTPERIIDAACQAARDGDTKYTPSGGTVALKDAIIE KTKRDSGLSFERNEVMVASGAKHALYALFQAILDEGDEVIVPAPYWVSYPEQIKLADGEPVLVDTNEETSFKLTPTQLES AITARTKAVILNSPSNPTGMIYTKEELQALADVVLRHNLLVVSDEIYEKLIYGDASFVSIATLPNMRERTIIINGVSKSH AMTGWRIGYAVGDAKIIGAMTNLASHSTSNPTSVAQAAAVEAYNGPQEDVEMMRQSFEERLEIVYDRLVKIPGITCLKPQ GAFYLYANAKVAATESGYDTVDAWCEAVLEEANVALVPGSGFGQDDYVRLSYATELKRVLEALDRVEDFVTKRAR
Specific function: Unknown
COG id: COG0436
COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI56713254, Length=343, Percent_Identity=30.0291545189504, Blast_Score=176, Evalue=3e-44, Organism=Homo sapiens, GI56713256, Length=343, Percent_Identity=30.0291545189504, Blast_Score=176, Evalue=3e-44, Organism=Homo sapiens, GI95147551, Length=396, Percent_Identity=28.2828282828283, Blast_Score=171, Evalue=9e-43, Organism=Homo sapiens, GI169881279, Length=396, Percent_Identity=28.2828282828283, Blast_Score=171, Evalue=9e-43, Organism=Homo sapiens, GI169881281, Length=391, Percent_Identity=23.7851662404092, Blast_Score=129, Evalue=3e-30, Organism=Homo sapiens, GI4507369, Length=388, Percent_Identity=23.7113402061856, Blast_Score=114, Evalue=2e-25, Organism=Homo sapiens, GI19263340, Length=383, Percent_Identity=24.5430809399478, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI215599424, Length=383, Percent_Identity=24.5430809399478, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI4885351, Length=360, Percent_Identity=25.8333333333333, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI149944424, Length=171, Percent_Identity=29.8245614035088, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI187936925, Length=174, Percent_Identity=32.183908045977, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI14211921, Length=174, Percent_Identity=32.183908045977, Blast_Score=73, Evalue=4e-13, Organism=Escherichia coli, GI1786816, Length=381, Percent_Identity=27.5590551181102, Blast_Score=159, Evalue=4e-40, Organism=Escherichia coli, GI1788722, Length=388, Percent_Identity=30.1546391752577, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI1788627, Length=392, Percent_Identity=28.8265306122449, Blast_Score=143, Evalue=2e-35, Organism=Escherichia coli, GI1787909, Length=352, Percent_Identity=22.4431818181818, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71994472, Length=289, Percent_Identity=30.7958477508651, Blast_Score=148, Evalue=4e-36, Organism=Caenorhabditis elegans, GI71994476, Length=289, Percent_Identity=30.7958477508651, Blast_Score=148, Evalue=5e-36, Organism=Caenorhabditis elegans, GI17567663, Length=376, Percent_Identity=27.9255319148936, Blast_Score=147, Evalue=8e-36, Organism=Caenorhabditis elegans, GI17567369, Length=359, Percent_Identity=27.5766016713092, Blast_Score=139, Evalue=2e-33, Organism=Caenorhabditis elegans, GI71981209, Length=368, Percent_Identity=22.0108695652174, Blast_Score=79, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6322401, Length=314, Percent_Identity=30.8917197452229, Blast_Score=146, Evalue=6e-36, Organism=Saccharomyces cerevisiae, GI6320317, Length=372, Percent_Identity=24.7311827956989, Blast_Score=100, Evalue=5e-22, Organism=Saccharomyces cerevisiae, GI6323118, Length=365, Percent_Identity=25.4794520547945, Blast_Score=91, Evalue=4e-19, Organism=Drosophila melanogaster, GI28573069, Length=291, Percent_Identity=31.9587628865979, Blast_Score=149, Evalue=4e-36, Organism=Drosophila melanogaster, GI24646114, Length=291, Percent_Identity=31.9587628865979, Blast_Score=149, Evalue=4e-36, Organism=Drosophila melanogaster, GI28573067, Length=291, Percent_Identity=31.9587628865979, Blast_Score=149, Evalue=4e-36, Organism=Drosophila melanogaster, GI28573065, Length=291, Percent_Identity=31.9587628865979, Blast_Score=149, Evalue=4e-36, Organism=Drosophila melanogaster, GI18859735, Length=310, Percent_Identity=25.4838709677419, Blast_Score=113, Evalue=3e-25, Organism=Drosophila melanogaster, GI45551451, Length=348, Percent_Identity=23.8505747126437, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24641770, Length=348, Percent_Identity=23.8505747126437, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24641760, Length=348, Percent_Identity=23.8505747126437, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24641768, Length=348, Percent_Identity=23.8505747126437, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24641766, Length=348, Percent_Identity=23.8505747126437, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24641764, Length=348, Percent_Identity=23.8505747126437, Blast_Score=77, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001176 - InterPro: IPR004839 - InterPro: IPR004838 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.6.1.1 [H]
Molecular weight: Translated: 42912; Mature: 42912
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: PS00105 AA_TRANSFER_CLASS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEHLLAKRVKQLTPSTTLAITAKAKALKASGKDVIGLGAGEPDFNTPERIIDAACQAARD CCHHHHHHHHHCCCCCEEEEEEHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCC GDTKYTPSGGTVALKDAIIEKTKRDSGLSFERNEVMVASGAKHALYALFQAILDEGDEVI CCCEECCCCCEEEHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEE VPAPYWVSYPEQIKLADGEPVLVDTNEETSFKLTPTQLESAITARTKAVILNSPSNPTGM ECCCHHCCCCCEEEECCCCEEEEECCCCCEEEECHHHHHHHHHHHEEEEEEECCCCCCEE IYTKEELQALADVVLRHNLLVVSDEIYEKLIYGDASFVSIATLPNMRERTIIINGVSKSH EEEHHHHHHHHHHHHHCCEEEEEHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCCC AMTGWRIGYAVGDAKIIGAMTNLASHSTSNPTSVAQAAAVEAYNGPQEDVEMMRQSFEER CCCCEEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LEIVYDRLVKIPGITCLKPQGAFYLYANAKVAATESGYDTVDAWCEAVLEEANVALVPGS HHHHHHHHHHCCCCEEECCCCCEEEEECCEEEECCCCCHHHHHHHHHHHHCCCEEEECCC GFGQDDYVRLSYATELKRVLEALDRVEDFVTKRAR CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MEHLLAKRVKQLTPSTTLAITAKAKALKASGKDVIGLGAGEPDFNTPERIIDAACQAARD CCHHHHHHHHHCCCCCEEEEEEHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCC GDTKYTPSGGTVALKDAIIEKTKRDSGLSFERNEVMVASGAKHALYALFQAILDEGDEVI CCCEECCCCCEEEHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEE VPAPYWVSYPEQIKLADGEPVLVDTNEETSFKLTPTQLESAITARTKAVILNSPSNPTGM ECCCHHCCCCCEEEECCCCEEEEECCCCCEEEECHHHHHHHHHHHEEEEEEECCCCCCEE IYTKEELQALADVVLRHNLLVVSDEIYEKLIYGDASFVSIATLPNMRERTIIINGVSKSH EEEHHHHHHHHHHHHHCCEEEEEHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCCC AMTGWRIGYAVGDAKIIGAMTNLASHSTSNPTSVAQAAAVEAYNGPQEDVEMMRQSFEER CCCCEEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LEIVYDRLVKIPGITCLKPQGAFYLYANAKVAATESGYDTVDAWCEAVLEEANVALVPGS HHHHHHHHHHCCCCEEECCCCCEEEEECCEEEECCCCCHHHHHHHHHHHHCCCEEEECCC GFGQDDYVRLSYATELKRVLEALDRVEDFVTKRAR CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]