| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is hepT [H]
Identifier: 229918708
GI number: 229918708
Start: 2956508
End: 2957470
Strand: Direct
Name: hepT [H]
Synonym: EAT1b_2995
Alternate gene names: 229918708
Gene position: 2956508-2957470 (Clockwise)
Preceding gene: 229918707
Following gene: 229918709
Centisome position: 98.55
GC content: 48.6
Gene sequence:
>963_bases ATGTCTTTGAAGCGACTTTATCGTCATATGAACCGAGAGATTGATCAAATCGATCAATTCTTATCTACTCGAGTCAGGAC GGACCACCCTGTCATTGAATCGGCATCGCGCCAATTACTCGATGCCGGTGGCAAGCGCATCCGACCCGCCTTCGTCTTAC TGAGCGCCGGGTTCGGTGAGACGAAAGATATCCGTTTGACGAAAGTTGCCTCAAGTCTTGAGTTGATTCATATGGCATCA CTCGTGCATGACGATGTCATCGACGACGCGATGCTCCGTCGTGGCAAACCGACCGTGATGGAACGATATGATGAAACAGT AGCGATGTATACAGGGAATACGTTATTCGGAGAAGCGATTCGTCTCGTATCCGAAATTGATTCACCAGAAGTGATGCGCA TCATGGCAGATACGATGGAACGAATCTGTGTCGGTGAAATCAATCAAATTCAAGATCAATATGAGTGGGGGCAATCACCG AAGCGCTATTTAGATCGGATTGCGCGAAAGACCGCTCTGTTGATTGAAACGAGTTGTGCGGCTGGAGCTGTCATCTCTGG AGCGTCTCCACAAACCGTGAAGCAATTAAGCCTGTTTGGATATGACATCGGCATGGCTTTTCAAATGACGGATGACTTGC TCGATTTTACCGCTAAGAGTTTTCAACTCGGTAAGCCGGTCGGGGAAGATTTGAAGCACGGTCATAAAACGTTACCGCTC CTGTATTCATCTGAGGACCCTGACTTTTATGAACGTCTCCGTCAAGTGAACGCCTCGACGGATGCGGAAGTGACGAAATC TCTCGTCCGGGAAGTGCAACGAAACGGAACGTTAGAACGCAGTCAACGGACGATCGATCGTTACGTCAATCGTGCCATCC GCCGACTAGACGGGTTGCCGGATGTTCCAGACAAGCGATCGTTAATTGAAATTGCGCAATATATTGGGAAACGCAAATGG TAA
Upstream 100 bases:
>100_bases GCTCAAGCGGATGTTCGAAGATGCCGGGTTTGAACAAGTCGAAGTGAAGACATTCTCCGGAGGTGCATGTGCCATGCATC TAGGAAAGAAGTGGTGAACC
Downstream 100 bases:
>100_bases ATGCCCATGTAACCCCTTTCAAAAATGTGTCGGACCGTGTACACTAAATACGTACATCGTACACATTTATAGACCTAGGG GGATTTGGGGAATGGAAAAG
Product: trans-hexaprenyltranstransferase
Products: NA
Alternate protein names: HEPPP synthase subunit 2; Spore germination protein C3 [H]
Number of amino acids: Translated: 320; Mature: 319
Protein sequence:
>320_residues MSLKRLYRHMNREIDQIDQFLSTRVRTDHPVIESASRQLLDAGGKRIRPAFVLLSAGFGETKDIRLTKVASSLELIHMAS LVHDDVIDDAMLRRGKPTVMERYDETVAMYTGNTLFGEAIRLVSEIDSPEVMRIMADTMERICVGEINQIQDQYEWGQSP KRYLDRIARKTALLIETSCAAGAVISGASPQTVKQLSLFGYDIGMAFQMTDDLLDFTAKSFQLGKPVGEDLKHGHKTLPL LYSSEDPDFYERLRQVNASTDAEVTKSLVREVQRNGTLERSQRTIDRYVNRAIRRLDGLPDVPDKRSLIEIAQYIGKRKW
Sequences:
>Translated_320_residues MSLKRLYRHMNREIDQIDQFLSTRVRTDHPVIESASRQLLDAGGKRIRPAFVLLSAGFGETKDIRLTKVASSLELIHMAS LVHDDVIDDAMLRRGKPTVMERYDETVAMYTGNTLFGEAIRLVSEIDSPEVMRIMADTMERICVGEINQIQDQYEWGQSP KRYLDRIARKTALLIETSCAAGAVISGASPQTVKQLSLFGYDIGMAFQMTDDLLDFTAKSFQLGKPVGEDLKHGHKTLPL LYSSEDPDFYERLRQVNASTDAEVTKSLVREVQRNGTLERSQRTIDRYVNRAIRRLDGLPDVPDKRSLIEIAQYIGKRKW >Mature_319_residues SLKRLYRHMNREIDQIDQFLSTRVRTDHPVIESASRQLLDAGGKRIRPAFVLLSAGFGETKDIRLTKVASSLELIHMASL VHDDVIDDAMLRRGKPTVMERYDETVAMYTGNTLFGEAIRLVSEIDSPEVMRIMADTMERICVGEINQIQDQYEWGQSPK RYLDRIARKTALLIETSCAAGAVISGASPQTVKQLSLFGYDIGMAFQMTDDLLDFTAKSFQLGKPVGEDLKHGHKTLPLL YSSEDPDFYERLRQVNASTDAEVTKSLVREVQRNGTLERSQRTIDRYVNRAIRRLDGLPDVPDKRSLIEIAQYIGKRKW
Specific function: Supplies heptaprenyl diphosphate, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [H]
COG id: COG0142
COG function: function code H; Geranylgeranyl pyrophosphate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FPP/GGPP synthase family [H]
Homologues:
Organism=Homo sapiens, GI50659086, Length=296, Percent_Identity=31.4189189189189, Blast_Score=140, Evalue=2e-33, Organism=Homo sapiens, GI4758430, Length=283, Percent_Identity=22.2614840989399, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI83700220, Length=283, Percent_Identity=22.2614840989399, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1789578, Length=322, Percent_Identity=28.5714285714286, Blast_Score=160, Evalue=7e-41, Organism=Escherichia coli, GI1786623, Length=245, Percent_Identity=32.2448979591837, Blast_Score=85, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17505681, Length=261, Percent_Identity=33.3333333333333, Blast_Score=144, Evalue=6e-35, Organism=Saccharomyces cerevisiae, GI6319475, Length=290, Percent_Identity=31.0344827586207, Blast_Score=134, Evalue=2e-32, Organism=Drosophila melanogaster, GI24651612, Length=302, Percent_Identity=29.4701986754967, Blast_Score=132, Evalue=3e-31, Organism=Drosophila melanogaster, GI281365769, Length=249, Percent_Identity=22.0883534136546, Blast_Score=66, Evalue=4e-11, Organism=Drosophila melanogaster, GI24660002, Length=249, Percent_Identity=22.0883534136546, Blast_Score=66, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014119 - InterPro: IPR000092 - InterPro: IPR017446 - InterPro: IPR008949 [H]
Pfam domain/function: PF00348 polyprenyl_synt [H]
EC number: =2.5.1.30 [H]
Molecular weight: Translated: 36383; Mature: 36252
Theoretical pI: Translated: 7.66; Mature: 7.66
Prosite motif: PS00723 POLYPRENYL_SYNTHET_1 ; PS00444 POLYPRENYL_SYNTHET_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLKRLYRHMNREIDQIDQFLSTRVRTDHPVIESASRQLLDAGGKRIRPAFVLLSAGFGE CCHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHEEEECCCCC TKDIRLTKVASSLELIHMASLVHDDVIDDAMLRRGKPTVMERYDETVAMYTGNTLFGEAI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEECCHHHHHHH RLVSEIDSPEVMRIMADTMERICVGEINQIQDQYEWGQSPKRYLDRIARKTALLIETSCA HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHH AGAVISGASPQTVKQLSLFGYDIGMAFQMTDDLLDFTAKSFQLGKPVGEDLKHGHKTLPL CCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCE LYSSEDPDFYERLRQVNASTDAEVTKSLVREVQRNGTLERSQRTIDRYVNRAIRRLDGLP EECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC DVPDKRSLIEIAQYIGKRKW CCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure SLKRLYRHMNREIDQIDQFLSTRVRTDHPVIESASRQLLDAGGKRIRPAFVLLSAGFGE CHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHEEEECCCCC TKDIRLTKVASSLELIHMASLVHDDVIDDAMLRRGKPTVMERYDETVAMYTGNTLFGEAI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEECCHHHHHHH RLVSEIDSPEVMRIMADTMERICVGEINQIQDQYEWGQSPKRYLDRIARKTALLIETSCA HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHH AGAVISGASPQTVKQLSLFGYDIGMAFQMTDDLLDFTAKSFQLGKPVGEDLKHGHKTLPL CCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCE LYSSEDPDFYERLRQVNASTDAEVTKSLVREVQRNGTLERSQRTIDRYVNRAIRRLDGLP EECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC DVPDKRSLIEIAQYIGKRKW CCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 2121900; 9720033 [H]