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The map label for this gene is codY

Identifier: 229918623

GI number: 229918623

Start: 2874765

End: 2875544

Strand: Direct

Name: codY

Synonym: EAT1b_2910

Alternate gene names: 229918623

Gene position: 2874765-2875544 (Clockwise)

Preceding gene: 229918622

Following gene: 229918624

Centisome position: 95.83

GC content: 44.87

Gene sequence:

>780_bases
ATGAACTTACTAGAAAAAACTCGCCAGTTAAACACGATGCTTCAACAAGAGGCAAGTGCGCACGTTGACTTTAAAGAAAT
GGCGGACAAAATGCGTGAAGTCCTTGAGTCCAACACATTTATCGTGAGCCGTCGCGGACGACTTCTCGGTTTTGCAATCA
AACAACAGATTGAGAATGACCGGATGAAAGCATTCTTAGTCGACCGACAGTTCCCAGAGCCGTATGCTTCGAACTTGTTC
AATGTGAAAGAAACGACAGCGAACATCGACATCGATAGTGAATATACAGCGTTCCCAGTCGAGAACCACGACCTATTCCT
TAACTCGAAGACGACGATTGTCCCAATCATCGGTGGAGGAGAACGTTTAGGTACGCTCGTCCTTGGTCGATTGGCGAATG
AATTCACAGAAGACGACCTCGTTCTCGCAGAATACTCAGCGACAGTAGTTGGAATGGAAATCCTTCGCGAGAAGGCTGCA
GAGGCAGAAACGTCGGCACGTAAGAAAGCGGTCGTCCAGATGGCGATTAACTCGTTATCATACTCGGAGCTTGAGGCAAT
CGAACATATCTTTGAAGAGCTTGGTGGAAACGAAGGACTGCTAGTTGCTTCCAAAATTGCCGATAGAGTGGGAATCACGC
GTTCGGTCATCGTCAATGCACTTCGAAAATTGGAAAGTGCAGGGGTTATTGAATCACGTTCTTTAGGAATGAAAGGAACG
TATATCAAGATATTAAATGATAACTTCTTGTTTGAATTACAAAAACTGAAATCAAACTGA

Upstream 100 bases:

>100_bases
ATACGTACAAGCAAAAGTCGGTTCAATCGCCGATGACCGTGATCTGAGCCAATATATTTTATAAGATTCTGTATGCACAT
ACAGGGAGGAAATAGAGATT

Downstream 100 bases:

>100_bases
AATACAACTTTCGATGTGTGATTTCCATTGAAAACACTTTTAAAAGGGACTTTATTCCTAAAAAACCGCTTTCCTCAACG
AGGGAGCGGTTTTTTTTAGT

Product: transcriptional repressor CodY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MNLLEKTRQLNTMLQQEASAHVDFKEMADKMREVLESNTFIVSRRGRLLGFAIKQQIENDRMKAFLVDRQFPEPYASNLF
NVKETTANIDIDSEYTAFPVENHDLFLNSKTTIVPIIGGGERLGTLVLGRLANEFTEDDLVLAEYSATVVGMEILREKAA
EAETSARKKAVVQMAINSLSYSELEAIEHIFEELGGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKILNDNFLFELQKLKSN

Sequences:

>Translated_259_residues
MNLLEKTRQLNTMLQQEASAHVDFKEMADKMREVLESNTFIVSRRGRLLGFAIKQQIENDRMKAFLVDRQFPEPYASNLF
NVKETTANIDIDSEYTAFPVENHDLFLNSKTTIVPIIGGGERLGTLVLGRLANEFTEDDLVLAEYSATVVGMEILREKAA
EAETSARKKAVVQMAINSLSYSELEAIEHIFEELGGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKILNDNFLFELQKLKSN
>Mature_259_residues
MNLLEKTRQLNTMLQQEASAHVDFKEMADKMREVLESNTFIVSRRGRLLGFAIKQQIENDRMKAFLVDRQFPEPYASNLF
NVKETTANIDIDSEYTAFPVENHDLFLNSKTTIVPIIGGGERLGTLVLGRLANEFTEDDLVLAEYSATVVGMEILREKAA
EAETSARKKAVVQMAINSLSYSELEAIEHIFEELGGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKILNDNFLFELQKLKSN

Specific function: DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of

COG id: COG4465

COG function: function code K; Pleiotropic transcriptional repressor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CodY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CODY_EXISA (C4L618)

Other databases:

- EMBL:   CP001615
- RefSeq:   YP_002887269.1
- GeneID:   7870165
- GenomeReviews:   CP001615_GR
- KEGG:   eat:EAT1b_2910
- OMA:   HIFEELD
- ProtClustDB:   PRK04158
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_00621
- InterPro:   IPR003018
- InterPro:   IPR014154
- InterPro:   IPR010312
- InterPro:   IPR013198
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF011572
- SMART:   SM00065
- TIGRFAMs:   TIGR02787

Pfam domain/function: PF06018 CodY; PF08222 HTH_CodY

EC number: NA

Molecular weight: Translated: 28978; Mature: 28978

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLEKTRQLNTMLQQEASAHVDFKEMADKMREVLESNTFIVSRRGRLLGFAIKQQIEND
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCC
RMKAFLVDRQFPEPYASNLFNVKETTANIDIDSEYTAFPVENHDLFLNSKTTIVPIIGGG
HHHEEEECCCCCCHHHHCCCCCHHHCCCEEECCCEEEECCCCCEEEEECCCEEEEEECCC
ERLGTLVLGRLANEFTEDDLVLAEYSATVVGMEILREKAAEAETSARKKAVVQMAINSLS
HHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YSELEAIEHIFEELGGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
HHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
YIKILNDNFLFELQKLKSN
EEEEECCCHHHHHHHHHCC
>Mature Secondary Structure
MNLLEKTRQLNTMLQQEASAHVDFKEMADKMREVLESNTFIVSRRGRLLGFAIKQQIEND
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCC
RMKAFLVDRQFPEPYASNLFNVKETTANIDIDSEYTAFPVENHDLFLNSKTTIVPIIGGG
HHHEEEECCCCCCHHHHCCCCCHHHCCCEEECCCEEEECCCCCEEEEECCCEEEEEECCC
ERLGTLVLGRLANEFTEDDLVLAEYSATVVGMEILREKAAEAETSARKKAVVQMAINSLS
HHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YSELEAIEHIFEELGGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
HHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
YIKILNDNFLFELQKLKSN
EEEEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA