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The map label for this gene is arcD [H]

Identifier: 229917996

GI number: 229917996

Start: 2230086

End: 2231489

Strand: Direct

Name: arcD [H]

Synonym: EAT1b_2275

Alternate gene names: 229917996

Gene position: 2230086-2231489 (Clockwise)

Preceding gene: 229917994

Following gene: 229917998

Centisome position: 74.34

GC content: 49.57

Gene sequence:

>1404_bases
TTGAAACAACATTCAGCCGGAATCGGCTTTTTCGGTCTAGCAGCAATGGTCGTTGGGACTATGATCGGTGGAGGTGCGTT
TAACCTGCCTGGTGCCATGGCACAAGGGGCAGGGGTCGGACCAGTTTTAATTGGATGGGGGATTACGGGAGTCGGCATGA
TTATGCTCGCCTTTGTCTTTCAGTTTTTAGCCAACACGCGGCCGGAGTTAGAAGGTGGAATTTATGCTTATGCTCGTGAA
GGCTTCGGGAAGTTTGTCGGATTCAACAGCGGCTGGGGATACTGGATGTCGGCTTGGATTGGGACGGTAGCCAACATCAC
GTTGATTTTCAGTACATTGGCTTATTTTTTCCCTGTTTTCTCAGCAGAACACCGACTGTTTCGCTTGTTCGTGAGTGTCG
TTCTGATTTGGGGTTTATTTTGGCTCATTTCACGCGGGATGCGTGAAGCGGCACTTCTCAATATCGTAACAACGATTGCG
AAACTCGTTCCGATTATCTTGTTTATCGTGTTGATTGTATTCGCCTTTCGAATCGATACGTTCCAAGTCGATTTTTGGGG
AGAAACAGGGTTTGTTTGGGCGGATGTGTTTCCACAAGTGAAGTCAACGATGCTCGTCACACTTTGGGCGTTTGTCGGGA
TTGAGGGAGCGGTCGTGTTGTCGTCGCGCGCACGTCATAAAAAAGATGTCGGTCGTGCCACGGTCATTGGCCTGATTGGG
ACGTTATTGATATATATGATGATTTCCATCTTCTCGTTTGGTGTCATGACACAGGAGCAACTCGCTGCGTTGCCTGAACC
GTCGATGGCATATGTGTTAGAAGCGGTCGTCGGCCCGTTCGGCGCAACATTGATTAACATCGGACTGCTCGTATCATTAA
CAGGCGCATTGCTCGGCTGGACGATTTTAGCGACGGAGATTTCGTACGTGGCGAGCCGGGATGGGGTGTTTCCGAAAGTA
TTTCACCGTTTGAATGCGAACGAGACACCAGTGAACGCGCTATTCATCACCCAAGCGTTCACTCAAGTGGTCACGGCCAT
CGCCTTGTTTTCAGAACAGACGTATCTCGTGCTTTCAAGCATCGCTGGAATCGCAGCACTCGTTCCTTATCTATTTTCGG
CACTCTATGGATGGATGGAGGCGAAGCGGACGACGTCGCTACGGATGATGGTCGTTTCCGGGATTGCCTCGCTATACGCC
GCCTGGTTACTCTATGCTTCAGGATTCGAGTATGTCTTGATTGCGATGATTCTATACGCACCTGGCATTTTCGTCTTTCT
TTTGGCAGAACGGGAACAAGGACGACCGTTCTTGACCCGTACCCAGTCGATGATTGCCTTGATTATTCTATTATGTGCGA
CCTATGGCATTTATGGGCTTTGGACAGCCACAATCGCTCTATAA

Upstream 100 bases:

>100_bases
AGCAATCCTTACAGGAAGTAGAATAGAAAAATCAACGAATGATTATACAATATTTTTGTATAGTTATTCGTATAGACAGG
ATAGTAGTGGAGGCGTTAAC

Downstream 100 bases:

>100_bases
GAAAGCTCACCGGCGCTTCAAGCGTCCGGTGAGTTTTTTAATGATCGGAGTAATTGTTCGATTGCACTTGGTGAAGCAGG
TCTTGCGTATAAATAGCCTT

Product: amino acid permease-associated region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MKQHSAGIGFFGLAAMVVGTMIGGGAFNLPGAMAQGAGVGPVLIGWGITGVGMIMLAFVFQFLANTRPELEGGIYAYARE
GFGKFVGFNSGWGYWMSAWIGTVANITLIFSTLAYFFPVFSAEHRLFRLFVSVVLIWGLFWLISRGMREAALLNIVTTIA
KLVPIILFIVLIVFAFRIDTFQVDFWGETGFVWADVFPQVKSTMLVTLWAFVGIEGAVVLSSRARHKKDVGRATVIGLIG
TLLIYMMISIFSFGVMTQEQLAALPEPSMAYVLEAVVGPFGATLINIGLLVSLTGALLGWTILATEISYVASRDGVFPKV
FHRLNANETPVNALFITQAFTQVVTAIALFSEQTYLVLSSIAGIAALVPYLFSALYGWMEAKRTTSLRMMVVSGIASLYA
AWLLYASGFEYVLIAMILYAPGIFVFLLAEREQGRPFLTRTQSMIALIILLCATYGIYGLWTATIAL

Sequences:

>Translated_467_residues
MKQHSAGIGFFGLAAMVVGTMIGGGAFNLPGAMAQGAGVGPVLIGWGITGVGMIMLAFVFQFLANTRPELEGGIYAYARE
GFGKFVGFNSGWGYWMSAWIGTVANITLIFSTLAYFFPVFSAEHRLFRLFVSVVLIWGLFWLISRGMREAALLNIVTTIA
KLVPIILFIVLIVFAFRIDTFQVDFWGETGFVWADVFPQVKSTMLVTLWAFVGIEGAVVLSSRARHKKDVGRATVIGLIG
TLLIYMMISIFSFGVMTQEQLAALPEPSMAYVLEAVVGPFGATLINIGLLVSLTGALLGWTILATEISYVASRDGVFPKV
FHRLNANETPVNALFITQAFTQVVTAIALFSEQTYLVLSSIAGIAALVPYLFSALYGWMEAKRTTSLRMMVVSGIASLYA
AWLLYASGFEYVLIAMILYAPGIFVFLLAEREQGRPFLTRTQSMIALIILLCATYGIYGLWTATIAL
>Mature_467_residues
MKQHSAGIGFFGLAAMVVGTMIGGGAFNLPGAMAQGAGVGPVLIGWGITGVGMIMLAFVFQFLANTRPELEGGIYAYARE
GFGKFVGFNSGWGYWMSAWIGTVANITLIFSTLAYFFPVFSAEHRLFRLFVSVVLIWGLFWLISRGMREAALLNIVTTIA
KLVPIILFIVLIVFAFRIDTFQVDFWGETGFVWADVFPQVKSTMLVTLWAFVGIEGAVVLSSRARHKKDVGRATVIGLIG
TLLIYMMISIFSFGVMTQEQLAALPEPSMAYVLEAVVGPFGATLINIGLLVSLTGALLGWTILATEISYVASRDGVFPKV
FHRLNANETPVNALFITQAFTQVVTAIALFSEQTYLVLSSIAGIAALVPYLFSALYGWMEAKRTTSLRMMVVSGIASLYA
AWLLYASGFEYVLIAMILYAPGIFVFLLAEREQGRPFLTRTQSMIALIILLCATYGIYGLWTATIAL

Specific function: Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway [H]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787890, Length=454, Percent_Identity=41.6299559471366, Blast_Score=339, Evalue=2e-94,
Organism=Escherichia coli, GI2367353, Length=415, Percent_Identity=29.1566265060241, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI1786908, Length=431, Percent_Identity=25.0580046403712, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1790575, Length=376, Percent_Identity=26.063829787234, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87082250, Length=345, Percent_Identity=22.8985507246377, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004754
- InterPro:   IPR022461 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 50883; Mature: 50883

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQHSAGIGFFGLAAMVVGTMIGGGAFNLPGAMAQGAGVGPVLIGWGITGVGMIMLAFVF
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHCCHHHHHHHHHHHHH
QFLANTRPELEGGIYAYAREGFGKFVGFNSGWGYWMSAWIGTVANITLIFSTLAYFFPVF
HHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAEHRLFRLFVSVVLIWGLFWLISRGMREAALLNIVTTIAKLVPIILFIVLIVFAFRIDT
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCE
FQVDFWGETGFVWADVFPQVKSTMLVTLWAFVGIEGAVVLSSRARHKKDVGRATVIGLIG
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHH
TLLIYMMISIFSFGVMTQEQLAALPEPSMAYVLEAVVGPFGATLINIGLLVSLTGALLGW
HHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TILATEISYVASRDGVFPKVFHRLNANETPVNALFITQAFTQVVTAIALFSEQTYLVLSS
HHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
IAGIAALVPYLFSALYGWMEAKRTTSLRMMVVSGIASLYAAWLLYASGFEYVLIAMILYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
PGIFVFLLAEREQGRPFLTRTQSMIALIILLCATYGIYGLWTATIAL
CHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQHSAGIGFFGLAAMVVGTMIGGGAFNLPGAMAQGAGVGPVLIGWGITGVGMIMLAFVF
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHCCHHHHHHHHHHHHH
QFLANTRPELEGGIYAYAREGFGKFVGFNSGWGYWMSAWIGTVANITLIFSTLAYFFPVF
HHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAEHRLFRLFVSVVLIWGLFWLISRGMREAALLNIVTTIAKLVPIILFIVLIVFAFRIDT
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCE
FQVDFWGETGFVWADVFPQVKSTMLVTLWAFVGIEGAVVLSSRARHKKDVGRATVIGLIG
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHH
TLLIYMMISIFSFGVMTQEQLAALPEPSMAYVLEAVVGPFGATLINIGLLVSLTGALLGW
HHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TILATEISYVASRDGVFPKVFHRLNANETPVNALFITQAFTQVVTAIALFSEQTYLVLSS
HHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
IAGIAALVPYLFSALYGWMEAKRTTSLRMMVVSGIASLYAAWLLYASGFEYVLIAMILYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
PGIFVFLLAEREQGRPFLTRTQSMIALIILLCATYGIYGLWTATIAL
CHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9053381; 11792842 [H]