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The map label for this gene is abaB [H]

Identifier: 229917813

GI number: 229917813

Start: 2045008

End: 2045871

Strand: Direct

Name: abaB [H]

Synonym: EAT1b_2091

Alternate gene names: 229917813

Gene position: 2045008-2045871 (Clockwise)

Preceding gene: 229917810

Following gene: 229917819

Centisome position: 68.17

GC content: 53.7

Gene sequence:

>864_bases
ATGATTGATTTTGAATGGTATCGCAGTTTTATCCACGTGTACCAGCAACGTTCCGTGTCGGCAGCAGCGCGTGTCCGTTT
TTTGACCCAACCGGCTGTCAGCCAGCATATCGCCGCACTCGAAGCGGAACTCGAGACGTCCCTCTTCACACGAGCGCCAC
GTCAGATGATTCCGACGGATGCGGGGAAGGAACTATACACGCAAGTGGTCGGCTTGATCGACCGTCTCGAGGAATTATCG
CTTGAGATGAAATACGTCTCAGGGGAGCAACCGCGTCCTGTCCTCAAGTTCGGTGGACCGACCGAGTTCGTCACACATGA
GATTATACCCGCTTTGCCGCTTGATGCTGCACAGTACATCGCAGATTTCGGGATGACAGCAGATTTGATCAAACGCTTGG
CGGACGGGGAGCTCGACTTTGTCATTGCGACGAAGCGGATGGAGGAGCCGGGGATTCAATACGTCCCCATTGCCGACGAA
TCGTTTTTGTTAGTGGCACCGAACGATTGGGAAGTTCCAACCGACGAGTTAAAAGACTGGATGGACCGTCAGCCGTGGAT
CAGTTACGGATTGGAGCTTCCCATCATCCGTCGTTACTACCAAACGCAGTTCGGGGAACGCCCAGACATTCGTCCAGAGA
TGATCCTACCGAACGTCGACGCCATCCTTGCGGCAATCGAATCGAAGTGTGGCATTAGCATCTTACCGAACTATTTAATT
CGGCATGCACTCGAGCGAGGAACGGTTCAAGTCGTGGCGCCGGAGCGTTTTGCGACGAACGTCATTTACCTCGCGCACCG
GACTGAGTCGAAGCATGACCCCGTCATCAATCAAGTCATCCAAGCGCTGCAGGATGCAAAATGA

Upstream 100 bases:

>100_bases
CTTATAAATTTATTTATCGATATATCCTTTAAACGTTATTTGTCTTATGATTTACTGCCTTTTATACTGAAGATAACGAA
TACAAAAGGAGTTTACACAG

Downstream 100 bases:

>100_bases
AGTAGGACCCACGTGGGCCCTACTTTTTATAATGCGTTTTTTAAGATTGCTGATACGTCTTGTTGACGGAGTGGGACGTA
CTGGCCAATCTGTTCAGCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MIDFEWYRSFIHVYQQRSVSAAARVRFLTQPAVSQHIAALEAELETSLFTRAPRQMIPTDAGKELYTQVVGLIDRLEELS
LEMKYVSGEQPRPVLKFGGPTEFVTHEIIPALPLDAAQYIADFGMTADLIKRLADGELDFVIATKRMEEPGIQYVPIADE
SFLLVAPNDWEVPTDELKDWMDRQPWISYGLELPIIRRYYQTQFGERPDIRPEMILPNVDAILAAIESKCGISILPNYLI
RHALERGTVQVVAPERFATNVIYLAHRTESKHDPVINQVIQALQDAK

Sequences:

>Translated_287_residues
MIDFEWYRSFIHVYQQRSVSAAARVRFLTQPAVSQHIAALEAELETSLFTRAPRQMIPTDAGKELYTQVVGLIDRLEELS
LEMKYVSGEQPRPVLKFGGPTEFVTHEIIPALPLDAAQYIADFGMTADLIKRLADGELDFVIATKRMEEPGIQYVPIADE
SFLLVAPNDWEVPTDELKDWMDRQPWISYGLELPIIRRYYQTQFGERPDIRPEMILPNVDAILAAIESKCGISILPNYLI
RHALERGTVQVVAPERFATNVIYLAHRTESKHDPVINQVIQALQDAK
>Mature_287_residues
MIDFEWYRSFIHVYQQRSVSAAARVRFLTQPAVSQHIAALEAELETSLFTRAPRQMIPTDAGKELYTQVVGLIDRLEELS
LEMKYVSGEQPRPVLKFGGPTEFVTHEIIPALPLDAAQYIADFGMTADLIKRLADGELDFVIATKRMEEPGIQYVPIADE
SFLLVAPNDWEVPTDELKDWMDRQPWISYGLELPIIRRYYQTQFGERPDIRPEMILPNVDAILAAIESKCGISILPNYLI
RHALERGTVQVVAPERFATNVIYLAHRTESKHDPVINQVIQALQDAK

Specific function: Putative regulator of secondary metabolism [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=254, Percent_Identity=22.8346456692913, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788297, Length=254, Percent_Identity=24.8031496062992, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32692; Mature: 32692

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFEWYRSFIHVYQQRSVSAAARVRFLTQPAVSQHIAALEAELETSLFTRAPRQMIPTD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
AGKELYTQVVGLIDRLEELSLEMKYVSGEQPRPVLKFGGPTEFVTHEIIPALPLDAAQYI
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHCCCCCHHHHHH
ADFGMTADLIKRLADGELDFVIATKRMEEPGIQYVPIADESFLLVAPNDWEVPTDELKDW
HHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHH
MDRQPWISYGLELPIIRRYYQTQFGERPDIRPEMILPNVDAILAAIESKCGISILPNYLI
HCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHCCCHHHHHHHHH
RHALERGTVQVVAPERFATNVIYLAHRTESKHDPVINQVIQALQDAK
HHHHHCCCEEEEECHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MIDFEWYRSFIHVYQQRSVSAAARVRFLTQPAVSQHIAALEAELETSLFTRAPRQMIPTD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
AGKELYTQVVGLIDRLEELSLEMKYVSGEQPRPVLKFGGPTEFVTHEIIPALPLDAAQYI
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHCCCCCHHHHHH
ADFGMTADLIKRLADGELDFVIATKRMEEPGIQYVPIADESFLLVAPNDWEVPTDELKDW
HHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHH
MDRQPWISYGLELPIIRRYYQTQFGERPDIRPEMILPNVDAILAAIESKCGISILPNYLI
HCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHCCCHHHHHHHHH
RHALERGTVQVVAPERFATNVIYLAHRTESKHDPVINQVIQALQDAK
HHHHHCCCEEEEECHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9037760 [H]