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The map label for this gene is cspD [H]

Identifier: 229917667

GI number: 229917667

Start: 1905873

End: 1906073

Strand: Direct

Name: cspD [H]

Synonym: EAT1b_1944

Alternate gene names: 229917667

Gene position: 1905873-1906073 (Clockwise)

Preceding gene: 229917665

Following gene: 229917668

Centisome position: 63.53

GC content: 42.79

Gene sequence:

>201_bases
ATGAACACAGGTAAAGTAAAATGGTTTAACTCAGAAAAAGGTTACGGCTTCATCGAAATGGAAGGCGGAGACGACGTATT
CGTACACTTCTCAGCAATCCAAGGCGACGGCTTCAAAACACTTGAAGAAGGCCAAGAAGTAACTTTCGAAATCACAGACG
GAGCTCGTGGACCACAAGCTTCTAACGTTGAAAAAATCTAA

Upstream 100 bases:

>100_bases
TTTTCATTAGATAATCCAGAGGCTTGTATTTTTTTTGGTCAAGTTTTTTCTAGTAAGGCACTACTATAACGCATAGCGTT
TATTTCAGGAGGGTTCATTC

Downstream 100 bases:

>100_bases
TCTTCCTTTCTAAGGAATATGATACCTGCTCGCATCGGCGAGCAGGTTTTTTTGTGTTTAATCCCATAGTTTGAGGGAAC
AGTATACGAGCGACAAATCA

Product: cold-shock DNA-binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MNTGKVKWFNSEKGYGFIEMEGGDDVFVHFSAIQGDGFKTLEEGQEVTFEITDGARGPQASNVEKI

Sequences:

>Translated_66_residues
MNTGKVKWFNSEKGYGFIEMEGGDDVFVHFSAIQGDGFKTLEEGQEVTFEITDGARGPQASNVEKI
>Mature_66_residues
MNTGKVKWFNSEKGYGFIEMEGGDDVFVHFSAIQGDGFKTLEEGQEVTFEITDGARGPQASNVEKI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=70.4918032786885, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=67.1875, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=64.5161290322581, Blast_Score=85, Evalue=9e-19,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=61.5384615384615, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=59.6774193548387, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1787834, Length=62, Percent_Identity=62.9032258064516, Blast_Score=77, Evalue=3e-16,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=49.2537313432836, Blast_Score=71, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7275; Mature: 7275

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTGKVKWFNSEKGYGFIEMEGGDDVFVHFSAIQGDGFKTLEEGQEVTFEITDGARGPQA
CCCCCEEEEECCCCCEEEEECCCCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCC
SNVEKI
CCCCCC
>Mature Secondary Structure
MNTGKVKWFNSEKGYGFIEMEGGDDVFVHFSAIQGDGFKTLEEGQEVTFEITDGARGPQA
CCCCCEEEEECCCCCEEEEECCCCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCC
SNVEKI
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631682 [H]