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The map label for this gene is licT [H]

Identifier: 229917602

GI number: 229917602

Start: 1843524

End: 1844375

Strand: Direct

Name: licT [H]

Synonym: EAT1b_1877

Alternate gene names: 229917602

Gene position: 1843524-1844375 (Clockwise)

Preceding gene: 229917601

Following gene: 229917603

Centisome position: 61.45

GC content: 45.07

Gene sequence:

>852_bases
ATGCATATTTCAAAAGTGTTCAACAACAATGTCGTAGCCATCGATGCGAACGGTCAAGAGCAGGTCGTGATGGGACGTGG
GATTGCGTTCCAAAAGCGACCAGGTGATCCGATTGACCAGACACGAATCGAAAAAATCTTTACGCTCGAGAGTAAAGAAA
GCTATGAGCGATTTGTTCACTTTTTAAATGAAATGCCGACGGATGAGATGGAGACGGTGAAACAGATTGTCAGATTAGCC
GAAGGGCGATTAACACAACCGATTCATGATTCGCTCTATGTGACACTAGCGGACCATCTACATTTTGCGCTTAGTCGGTA
TCAGGATGGAATCCAAATTCGAAATCCTCTCGTTTGGGAAGTGAAACGATTTTATGCTCCGGAGTTCGCTATCGGAAAAG
AAGCGGTTAAACTGATCAATGAGCGGCACGAGGTCAAGCTTGATGAAGATGAGGCGGTAGCGATTGCCTTACATCTCGTC
AATGCGACGATGTCTGGTGTCAAAGGTGAGAACCTGCATCTTGTTACCGAGATGACGAGAGCCACGCAAGCGATTCTGAC
GATCATTACGTACCATTTTCAAATCGAATTGGACGAAGAGTCATACGCGTATGCACGCTTTTTGACACATTTAAAATATT
TTGTGCAGCGCCTTGCATCAGGAGAGAAGGTCAAGTCAACGGGTGACGAAACCTTATTCCTGATGGTGAAGCAGAGATAC
CCGGAAGCGTTCGAATGCGTTGAAAAAATCGCCGGGTTGATTGCGACGAAATATCATTACGACGTATCGATGGACGAACG
GCTGTATATGATGATTCATATCGAAAACTTAATGAAAGAACGTCGATCCTAA

Upstream 100 bases:

>100_bases
GCAAAACCTAAATTGATGCCATGACTCCATATTGGATTCTGGTGTGAATTTAGGTTTTTTTCTTTTCAGTTCAGTTGAAT
GAGAGCGAGGTGAGGAGACC

Downstream 100 bases:

>100_bases
GGATGGTTACTGATGACGCAGGCCAAACCTAAATGACTACACCTTTATTTGTGTAGTGATTTAGGTTTTTCTTTTTATCC
AAAAACATGAGGAGTGAACA

Product: transcriptional antiterminator, BglG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MHISKVFNNNVVAIDANGQEQVVMGRGIAFQKRPGDPIDQTRIEKIFTLESKESYERFVHFLNEMPTDEMETVKQIVRLA
EGRLTQPIHDSLYVTLADHLHFALSRYQDGIQIRNPLVWEVKRFYAPEFAIGKEAVKLINERHEVKLDEDEAVAIALHLV
NATMSGVKGENLHLVTEMTRATQAILTIITYHFQIELDEESYAYARFLTHLKYFVQRLASGEKVKSTGDETLFLMVKQRY
PEAFECVEKIAGLIATKYHYDVSMDERLYMMIHIENLMKERRS

Sequences:

>Translated_283_residues
MHISKVFNNNVVAIDANGQEQVVMGRGIAFQKRPGDPIDQTRIEKIFTLESKESYERFVHFLNEMPTDEMETVKQIVRLA
EGRLTQPIHDSLYVTLADHLHFALSRYQDGIQIRNPLVWEVKRFYAPEFAIGKEAVKLINERHEVKLDEDEAVAIALHLV
NATMSGVKGENLHLVTEMTRATQAILTIITYHFQIELDEESYAYARFLTHLKYFVQRLASGEKVKSTGDETLFLMVKQRY
PEAFECVEKIAGLIATKYHYDVSMDERLYMMIHIENLMKERRS
>Mature_283_residues
MHISKVFNNNVVAIDANGQEQVVMGRGIAFQKRPGDPIDQTRIEKIFTLESKESYERFVHFLNEMPTDEMETVKQIVRLA
EGRLTQPIHDSLYVTLADHLHFALSRYQDGIQIRNPLVWEVKRFYAPEFAIGKEAVKLINERHEVKLDEDEAVAIALHLV
NATMSGVKGENLHLVTEMTRATQAILTIITYHFQIELDEESYAYARFLTHLKYFVQRLASGEKVKSTGDETLFLMVKQRY
PEAFECVEKIAGLIATKYHYDVSMDERLYMMIHIENLMKERRS

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=281, Percent_Identity=40.5693950177936, Blast_Score=221, Evalue=5e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32840; Mature: 32840

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHISKVFNNNVVAIDANGQEQVVMGRGIAFQKRPGDPIDQTRIEKIFTLESKESYERFVH
CCCHHHHCCCEEEEECCCCCEEEEECCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHH
FLNEMPTDEMETVKQIVRLAEGRLTQPIHDSLYVTLADHLHFALSRYQDGIQIRNPLVWE
HHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHH
VKRFYAPEFAIGKEAVKLINERHEVKLDEDEAVAIALHLVNATMSGVKGENLHLVTEMTR
HHHHHCCCHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHH
ATQAILTIITYHFQIELDEESYAYARFLTHLKYFVQRLASGEKVKSTGDETLFLMVKQRY
HHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEHHHC
PEAFECVEKIAGLIATKYHYDVSMDERLYMMIHIENLMKERRS
CHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEHHHHHHHHCC
>Mature Secondary Structure
MHISKVFNNNVVAIDANGQEQVVMGRGIAFQKRPGDPIDQTRIEKIFTLESKESYERFVH
CCCHHHHCCCEEEEECCCCCEEEEECCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHH
FLNEMPTDEMETVKQIVRLAEGRLTQPIHDSLYVTLADHLHFALSRYQDGIQIRNPLVWE
HHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHH
VKRFYAPEFAIGKEAVKLINERHEVKLDEDEAVAIALHLVNATMSGVKGENLHLVTEMTR
HHHHHCCCHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHH
ATQAILTIITYHFQIELDEESYAYARFLTHLKYFVQRLASGEKVKSTGDETLFLMVKQRY
HHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEHHHC
PEAFECVEKIAGLIATKYHYDVSMDERLYMMIHIENLMKERRS
CHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]