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The map label for this gene is ydeL [H]

Identifier: 229917445

GI number: 229917445

Start: 1678344

End: 1679747

Strand: Direct

Name: ydeL [H]

Synonym: EAT1b_1720

Alternate gene names: 229917445

Gene position: 1678344-1679747 (Clockwise)

Preceding gene: 229917444

Following gene: 229917446

Centisome position: 55.95

GC content: 49.57

Gene sequence:

>1404_bases
ATGGACATGCTTACCTTATCGCTTGATCAAGAGTCGTCCATCCCGCTTTACGAGCAATTGTACAAACACATTCGGGATGC
CATCCTCGACGATACGTTAAAAACAGGAACTAAATTACCTTCAAAGCGTAAGCTCTCTCAATTTTTAGATGTGTCGCAGA
CAACGGTCGAGTTCGCATATGCCCAGTTACTCGCCGAAGGATACATCGAATCCATTCCTCGAAAAGGATTTTATGTGTTA
CCACAAGAGGAGCTGTACGTCCGGCGCTCGAGTAGCACCATCGCCCCGACACCTCCACGAAAGACGTATGCTTATGATGT
TTCCCCGAGTCAAATCGACACGACTGCCTTCCCGTTTGAACGGTGGAAGCGACATATCAAACATGTCGTCGATGACGTGA
ATCATGAATTACTTGCGTTAGGTTCTGTTCAAGGAGATATAGAATTGCGTCAAGAAATCGCCACGTATCTCTATCACTCT
CGCGGCGTACAGTGCTCACCAGAACAGATCATCGTCGGCTCCGGAACGGAACAGCTGTTGCCACAGCTCTTGAATCTCTT
ACCGGACTCGTCTATCTTCGGAATCGAAGACCCTGGCTATCCGCTCACGCGCCTGTTGTTCGAGCAACAAGGACGCACAT
CGATTCCGATTCCGGTAGACGATAGTGGTGTTTGTGTGAATGAGCTCGAGCGTCATGCAATCGATGCACTATATGTCACA
CCTGCTCATCAATTTCCGACAGGGACCGTCTTGTCCGTCAGTCGAAGACAACGTTTGTTAAATTGGGCACTCGTCCATCA
GACGTATATCATCGAAGACGATTACGACAGCGAGTTTCGCTATAGCGGCAAGCCGATCCCGTCCCTGCAGAGCATGGACC
CGAACGAACGGGTCATCTACATCAGTACGTTTTCAAAATCTCTCATGCCATCCTTACGCATCGGCTATATGGTCTTACCG
ACACCTTTATTAAACCGTTATCGGGAACGACACCGGTATTTCACCTGTAGCGTTCCCCGGTTCGAACAACAAACGTTGGC
CCTATTCATGTCGAGCGGTGACTTTGAAAAGCATTTGAACCGGATGCGAAAAATATACCGTCGTAAGTTAGAAAGTGTCC
TCGCTGCCTTCCGACCATTCGAACCGACCGTCACCGTGACCGGAGCAAGTGCCGGACTGCACGTCGTGTTGACCATCGCC
ACCGAGCGAACGGAACAAGAATTGAAGCAGTCCGCCGAATCCGCGGGAATCGCCATTAAATCCATGAACGACTATCGCAT
CGTGTATCCAGACTCCCACAAGCAATTTCTGTTCGGGTTTGCGCATTTGTCTGAGTCGACGTTACCTGACGTGATTGAGC
AGTTGATGGTTGCGTGGGCAGTTGCAAAAGGAGGAAAATCATGA

Upstream 100 bases:

>100_bases
TCGTGCCTCATTCGGTACACCCGGGATTGTCTCTTTCATCATCATTCTTGGGTTTATGCTCTACTTCTTTTTTGGTTCAT
AAAGAAAGGAACGTCACACC

Downstream 100 bases:

>100_bases
ATCGACGTATCCGATGGTTCATCGGACTTTTACTCATCGGGAGCGGCGTCCTCTTTTTGACGAGCCCGATTTGGAAAAAT
GCCATTGCTAGTTCGACGAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MDMLTLSLDQESSIPLYEQLYKHIRDAILDDTLKTGTKLPSKRKLSQFLDVSQTTVEFAYAQLLAEGYIESIPRKGFYVL
PQEELYVRRSSSTIAPTPPRKTYAYDVSPSQIDTTAFPFERWKRHIKHVVDDVNHELLALGSVQGDIELRQEIATYLYHS
RGVQCSPEQIIVGSGTEQLLPQLLNLLPDSSIFGIEDPGYPLTRLLFEQQGRTSIPIPVDDSGVCVNELERHAIDALYVT
PAHQFPTGTVLSVSRRQRLLNWALVHQTYIIEDDYDSEFRYSGKPIPSLQSMDPNERVIYISTFSKSLMPSLRIGYMVLP
TPLLNRYRERHRYFTCSVPRFEQQTLALFMSSGDFEKHLNRMRKIYRRKLESVLAAFRPFEPTVTVTGASAGLHVVLTIA
TERTEQELKQSAESAGIAIKSMNDYRIVYPDSHKQFLFGFAHLSESTLPDVIEQLMVAWAVAKGGKS

Sequences:

>Translated_467_residues
MDMLTLSLDQESSIPLYEQLYKHIRDAILDDTLKTGTKLPSKRKLSQFLDVSQTTVEFAYAQLLAEGYIESIPRKGFYVL
PQEELYVRRSSSTIAPTPPRKTYAYDVSPSQIDTTAFPFERWKRHIKHVVDDVNHELLALGSVQGDIELRQEIATYLYHS
RGVQCSPEQIIVGSGTEQLLPQLLNLLPDSSIFGIEDPGYPLTRLLFEQQGRTSIPIPVDDSGVCVNELERHAIDALYVT
PAHQFPTGTVLSVSRRQRLLNWALVHQTYIIEDDYDSEFRYSGKPIPSLQSMDPNERVIYISTFSKSLMPSLRIGYMVLP
TPLLNRYRERHRYFTCSVPRFEQQTLALFMSSGDFEKHLNRMRKIYRRKLESVLAAFRPFEPTVTVTGASAGLHVVLTIA
TERTEQELKQSAESAGIAIKSMNDYRIVYPDSHKQFLFGFAHLSESTLPDVIEQLMVAWAVAKGGKS
>Mature_467_residues
MDMLTLSLDQESSIPLYEQLYKHIRDAILDDTLKTGTKLPSKRKLSQFLDVSQTTVEFAYAQLLAEGYIESIPRKGFYVL
PQEELYVRRSSSTIAPTPPRKTYAYDVSPSQIDTTAFPFERWKRHIKHVVDDVNHELLALGSVQGDIELRQEIATYLYHS
RGVQCSPEQIIVGSGTEQLLPQLLNLLPDSSIFGIEDPGYPLTRLLFEQQGRTSIPIPVDDSGVCVNELERHAIDALYVT
PAHQFPTGTVLSVSRRQRLLNWALVHQTYIIEDDYDSEFRYSGKPIPSLQSMDPNERVIYISTFSKSLMPSLRIGYMVLP
TPLLNRYRERHRYFTCSVPRFEQQTLALFMSSGDFEKHLNRMRKIYRRKLESVLAAFRPFEPTVTVTGASAGLHVVLTIA
TERTEQELKQSAESAGIAIKSMNDYRIVYPDSHKQFLFGFAHLSESTLPDVIEQLMVAWAVAKGGKS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=227, Percent_Identity=25.9911894273128, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI33469970, Length=227, Percent_Identity=25.9911894273128, Blast_Score=73, Evalue=5e-13,
Organism=Escherichia coli, GI1790797, Length=413, Percent_Identity=26.1501210653753, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1787710, Length=428, Percent_Identity=25, Blast_Score=106, Evalue=3e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53144; Mature: 53144

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMLTLSLDQESSIPLYEQLYKHIRDAILDDTLKTGTKLPSKRKLSQFLDVSQTTVEFAY
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
AQLLAEGYIESIPRKGFYVLPQEELYVRRSSSTIAPTPPRKTYAYDVSPSQIDTTAFPFE
HHHHHHHHHHHCCCCCEEECCCHHHEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCHH
RWKRHIKHVVDDVNHELLALGSVQGDIELRQEIATYLYHSRGVQCSPEQIIVGSGTEQLL
HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHH
PQLLNLLPDSSIFGIEDPGYPLTRLLFEQQGRTSIPIPVDDSGVCVNELERHAIDALYVT
HHHHHHCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCEEEEC
PAHQFPTGTVLSVSRRQRLLNWALVHQTYIIEDDYDSEFRYSGKPIPSLQSMDPNERVIY
CCCCCCCCCEEEHHHHHHHHHHHHHHEEEEEECCCCCCCEECCCCCCCCCCCCCCCEEEE
ISTFSKSLMPSLRIGYMVLPTPLLNRYRERHRYFTCSVPRFEQQTLALFMSSGDFEKHLN
EEECCHHHCCHHHCCEEEECCHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCCCHHHHHH
RMRKIYRRKLESVLAAFRPFEPTVTVTGASAGLHVVLTIATERTEQELKQSAESAGIAIK
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHCCEEEE
SMNDYRIVYPDSHKQFLFGFAHLSESTLPDVIEQLMVAWAVAKGGKS
ECCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDMLTLSLDQESSIPLYEQLYKHIRDAILDDTLKTGTKLPSKRKLSQFLDVSQTTVEFAY
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
AQLLAEGYIESIPRKGFYVLPQEELYVRRSSSTIAPTPPRKTYAYDVSPSQIDTTAFPFE
HHHHHHHHHHHCCCCCEEECCCHHHEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCHH
RWKRHIKHVVDDVNHELLALGSVQGDIELRQEIATYLYHSRGVQCSPEQIIVGSGTEQLL
HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHH
PQLLNLLPDSSIFGIEDPGYPLTRLLFEQQGRTSIPIPVDDSGVCVNELERHAIDALYVT
HHHHHHCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCEEEEC
PAHQFPTGTVLSVSRRQRLLNWALVHQTYIIEDDYDSEFRYSGKPIPSLQSMDPNERVIY
CCCCCCCCCEEEHHHHHHHHHHHHHHEEEEEECCCCCCCEECCCCCCCCCCCCCCCEEEE
ISTFSKSLMPSLRIGYMVLPTPLLNRYRERHRYFTCSVPRFEQQTLALFMSSGDFEKHLN
EEECCHHHCCHHHCCEEEECCHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCCCHHHHHH
RMRKIYRRKLESVLAAFRPFEPTVTVTGASAGLHVVLTIATERTEQELKQSAESAGIAIK
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHCCEEEE
SMNDYRIVYPDSHKQFLFGFAHLSESTLPDVIEQLMVAWAVAKGGKS
ECCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]