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The map label for this gene is yabO [H]

Identifier: 229917407

GI number: 229917407

Start: 1631434

End: 1631706

Strand: Reverse

Name: yabO [H]

Synonym: EAT1b_1682

Alternate gene names: 229917407

Gene position: 1631706-1631434 (Counterclockwise)

Preceding gene: 229917408

Following gene: 229917406

Centisome position: 54.39

GC content: 42.86

Gene sequence:

>273_bases
ATGAGACTAGATAAGTTTTTAAAAGTGTCACGTCTAATCAAGCGTCGCACGTTGGCAAAAGAAGTGGCGGACCAAGGACG
AATTCAACTGAATGGGCAAGTCGCGAAGGCGAGTACAGAAGTCAAAGTCGGAGATGAGTTACAAATTCGCTTCGGAAACA
AACTCGTCACGGTCGTCATCGATTCAATCGCAGAACATGCACGTAAAGAAGATGCGAAAGAAATGTATCGTTTACTTAAA
GAAGAGAAGATGGACGGTAGTATCAACTCATAA

Upstream 100 bases:

>100_bases
TCAAACGTCGATTCGAGTACGTGGAAGCGAACGGTGACCTTCACCAGATGACACTCGAACAGATGGATGCGCTTTGGAAC
GAGGCAAAGGAGAAAGGTTT

Downstream 100 bases:

>100_bases
AAAAAAGTATACTTAATGTATTAAGAGGAGGGGGATGAGGCGATGAACGGACGTAATCCGATGGATCGACAACGACGCAT
TCGAGCGCTAGATGAGCGTA

Product: RNA-binding S4 domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRIQLNGQVAKASTEVKVGDELQIRFGNKLVTVVIDSIAEHARKEDAKEMYRLLK
EEKMDGSINS

Sequences:

>Translated_90_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRIQLNGQVAKASTEVKVGDELQIRFGNKLVTVVIDSIAEHARKEDAKEMYRLLK
EEKMDGSINS
>Mature_90_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRIQLNGQVAKASTEVKVGDELQIRFGNKLVTVVIDSIAEHARKEDAKEMYRLLK
EEKMDGSINS

Specific function: Involved In The Recycling Of Free 50s Ribosomal Subunits That Still Carry A Nascent Chain. Binds RNA More Specifically Than DNA. Binds With Very High Affinity To The Free 50s Ribosomal Subunit. Does Not Bind It When It Is Part Of The 70s Ribosome. [C]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 10256; Mature: 10256

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS50889 S4 ; PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDKFLKVSRLIKRRTLAKEVADQGRIQLNGQVAKASTEVKVGDELQIRFGNKLVTVVI
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCEECCCEEEEEECCCHHHHHH
DSIAEHARKEDAKEMYRLLKEEKMDGSINS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRLDKFLKVSRLIKRRTLAKEVADQGRIQLNGQVAKASTEVKVGDELQIRFGNKLVTVVI
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCEECCCEEEEEECCCHHHHHH
DSIAEHARKEDAKEMYRLLKEEKMDGSINS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]