| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
Click here to switch to the map view.
The map label for this gene is gltX [H]
Identifier: 229917381
GI number: 229917381
Start: 1598269
End: 1599723
Strand: Reverse
Name: gltX [H]
Synonym: EAT1b_1656
Alternate gene names: 229917381
Gene position: 1599723-1598269 (Counterclockwise)
Preceding gene: 229917382
Following gene: 229917380
Centisome position: 53.33
GC content: 48.18
Gene sequence:
>1455_bases ATGAGTGAAGTGCGTGTACGCTATGCGCCTAGTCCGACGGGGCATCTCCATATCGGAAATGCGCGGACTGCGTTGTTTAA CTACTTATTTGCTCGCCATGCTGGCGGAAAAATGATTCTTCGGATTGAAGACACTGACCAGAAACGGAATGTGTTGAACG GTGTCGAGAGTCAGATGAAATACTTGGAATGGCTCGGCATCGACTGGGATGAAGGTCCAGGTCGTGACGGAGACTACGGC CCATATTATCAAATGGAGCGTCTTGCGATTTATGAAAAATACGTCAACGAGTTGATGAGCAAAGGCCTCGCTTATAAATG CTACATGACTTCTGAGGAGCTTGAAGCAGAGCGTGAAGCACAAATCGCACGTGGGGAGGCACCACGTTATTCGGGTGCGC ACCGTAACCTCACTGTTGAAGAGCGTGAAGCGTTTGAAGCGGAAGGGCGTAAACCGTCTATTCGGATCCGTGTGCCGGAA GGCGTGACGTATAAATGGACAGATGTCGTCAAAGGAGACGTCTCGTTTGAATCAAAAGATTTCGGTGACTGGGTCATCGT GAAACAGGATGGCATTCCGACGTACAACTTCGCAGTTGTCGTGGACGACCATTTGATGAAGATCAGTCACGTGTTGCGTG GGGACGATCACATCGCGAACACACCGAAACAGATGATGGTCTATGATGCACTCGGTTGGGACTATCCTGAATTCGGTCAC ATGACGCTCATCTACAATGACCAACATAAGAAGTTATCAAAACGGGACGAATCGATTATTCAGTTCATCGAACAATATGC GGATCTCGGCTACTTGCCAGCAGCACTCTTTAACTTCATTTCGCTCCTTGGCTGGTCACCGGTCGGGGAAGAAGAAATCT TCTCAAAAGAAGAGTTCATTGAAATGTTTGATGCGAAACGTTTGTCGAAGAGTCCGGCAGTTTTTGACCAACAAAAACTT TCTTGGATCAACAGTGTATACATGAAGAAGGCCACGCTTGACGAAGTGGTGGCACTCAGTTTACCATTCTTACAAGAAGC AGGACGATTACCCGAGGCGGTATCTGTTGAGGAAGCGGATTGGGCGACAAACTTGATTGCATTGTATAAAGAACAAATGA CGCACGGAGCAGAAATCGTCGCGTTGACAGACTTGTTCTTCAAAGATGAAATCGAGTATGACGAGGAAGCGAACGCTGTC CTTTCAGGTGAAACGGTACCTGCTGTTCTTGCAGAGTTCAAACAGCAGCTCGAAGCAATCGAAGACTTCACACCGGAAGC GATTAAAGCGGCGACGAAAGCGACGCAAAAAGCGACCGGTCAAAAAGGGAAGAACTTGTTCATGCCGATCCGTGTCGCTA CGACAGGGCAAACACATGGACCGGAACTCCCGAACGCCATTTCGTTAATCGGAAAAGAGCGTGTGTTGAAGCGTCTGACA ACTTTATTAGCGTAA
Upstream 100 bases:
>100_bases ACGCGAAGAGGGAATCGCGGCGCAAGCGGTCATCTTACTCAACCGGGCTTGACAGAAATGGTATACTATTTGGGCAGAAG AGAAGAAAGGTGGAACTATT
Downstream 100 bases:
>100_bases TAAAGGCATCGATGAGGAAAGTAAGCGGTACGACACGTTGCAGAGACTAGAACCTAGGCTGGGAGTTCTAGATGTGTCCC CCGAAGAAGTGCACCTCGGA
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS [H]
Number of amino acids: Translated: 484; Mature: 483
Protein sequence:
>484_residues MSEVRVRYAPSPTGHLHIGNARTALFNYLFARHAGGKMILRIEDTDQKRNVLNGVESQMKYLEWLGIDWDEGPGRDGDYG PYYQMERLAIYEKYVNELMSKGLAYKCYMTSEELEAEREAQIARGEAPRYSGAHRNLTVEEREAFEAEGRKPSIRIRVPE GVTYKWTDVVKGDVSFESKDFGDWVIVKQDGIPTYNFAVVVDDHLMKISHVLRGDDHIANTPKQMMVYDALGWDYPEFGH MTLIYNDQHKKLSKRDESIIQFIEQYADLGYLPAALFNFISLLGWSPVGEEEIFSKEEFIEMFDAKRLSKSPAVFDQQKL SWINSVYMKKATLDEVVALSLPFLQEAGRLPEAVSVEEADWATNLIALYKEQMTHGAEIVALTDLFFKDEIEYDEEANAV LSGETVPAVLAEFKQQLEAIEDFTPEAIKAATKATQKATGQKGKNLFMPIRVATTGQTHGPELPNAISLIGKERVLKRLT TLLA
Sequences:
>Translated_484_residues MSEVRVRYAPSPTGHLHIGNARTALFNYLFARHAGGKMILRIEDTDQKRNVLNGVESQMKYLEWLGIDWDEGPGRDGDYG PYYQMERLAIYEKYVNELMSKGLAYKCYMTSEELEAEREAQIARGEAPRYSGAHRNLTVEEREAFEAEGRKPSIRIRVPE GVTYKWTDVVKGDVSFESKDFGDWVIVKQDGIPTYNFAVVVDDHLMKISHVLRGDDHIANTPKQMMVYDALGWDYPEFGH MTLIYNDQHKKLSKRDESIIQFIEQYADLGYLPAALFNFISLLGWSPVGEEEIFSKEEFIEMFDAKRLSKSPAVFDQQKL SWINSVYMKKATLDEVVALSLPFLQEAGRLPEAVSVEEADWATNLIALYKEQMTHGAEIVALTDLFFKDEIEYDEEANAV LSGETVPAVLAEFKQQLEAIEDFTPEAIKAATKATQKATGQKGKNLFMPIRVATTGQTHGPELPNAISLIGKERVLKRLT TLLA >Mature_483_residues SEVRVRYAPSPTGHLHIGNARTALFNYLFARHAGGKMILRIEDTDQKRNVLNGVESQMKYLEWLGIDWDEGPGRDGDYGP YYQMERLAIYEKYVNELMSKGLAYKCYMTSEELEAEREAQIARGEAPRYSGAHRNLTVEEREAFEAEGRKPSIRIRVPEG VTYKWTDVVKGDVSFESKDFGDWVIVKQDGIPTYNFAVVVDDHLMKISHVLRGDDHIANTPKQMMVYDALGWDYPEFGHM TLIYNDQHKKLSKRDESIIQFIEQYADLGYLPAALFNFISLLGWSPVGEEEIFSKEEFIEMFDAKRLSKSPAVFDQQKLS WINSVYMKKATLDEVVALSLPFLQEAGRLPEAVSVEEADWATNLIALYKEQMTHGAEIVALTDLFFKDEIEYDEEANAVL SGETVPAVLAEFKQQLEAIEDFTPEAIKAATKATQKATGQKGKNLFMPIRVATTGQTHGPELPNAISLIGKERVLKRLTT LLA
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=502, Percent_Identity=33.0677290836653, Blast_Score=252, Evalue=6e-67, Organism=Escherichia coli, GI1788743, Length=481, Percent_Identity=37.6299376299376, Blast_Score=325, Evalue=3e-90, Organism=Escherichia coli, GI226510925, Length=253, Percent_Identity=33.596837944664, Blast_Score=129, Evalue=6e-31, Organism=Escherichia coli, GI1786895, Length=221, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71993394, Length=487, Percent_Identity=32.4435318275154, Blast_Score=233, Evalue=2e-61, Organism=Saccharomyces cerevisiae, GI6324540, Length=509, Percent_Identity=33.2023575638507, Blast_Score=244, Evalue=2e-65, Organism=Saccharomyces cerevisiae, GI6321192, Length=216, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6324742, Length=143, Percent_Identity=31.4685314685315, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI24665321, Length=496, Percent_Identity=33.8709677419355, Blast_Score=267, Evalue=1e-71,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 54891; Mature: 54760
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEVRVRYAPSPTGHLHIGNARTALFNYLFARHAGGKMILRIEDTDQKRNVLNGVESQMK CCCCEEEECCCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHH YLEWLGIDWDEGPGRDGDYGPYYQMERLAIYEKYVNELMSKGLAYKCYMTSEELEAEREA HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH QIARGEAPRYSGAHRNLTVEEREAFEAEGRKPSIRIRVPEGVTYKWTDVVKGDVSFESKD HHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCEEEEHHHEECCCCCCCCC FGDWVIVKQDGIPTYNFAVVVDDHLMKISHVLRGDDHIANTPKQMMVYDALGWDYPEFGH CCCEEEEECCCCCCEEEEEEECHHHHHHHHHHCCCCHHCCCCHHHEEEHHCCCCCCCCCC MTLIYNDQHKKLSKRDESIIQFIEQYADLGYLPAALFNFISLLGWSPVGEEEIFSKEEFI EEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH EMFDAKRLSKSPAVFDQQKLSWINSVYMKKATLDEVVALSLPFLQEAGRLPEAVSVEEAD HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH WATNLIALYKEQMTHGAEIVALTDLFFKDEIEYDEEANAVLSGETVPAVLAEFKQQLEAI HHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHH EDFTPEAIKAATKATQKATGQKGKNLFMPIRVATTGQTHGPELPNAISLIGKERVLKRLT HHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH TLLA HHHC >Mature Secondary Structure SEVRVRYAPSPTGHLHIGNARTALFNYLFARHAGGKMILRIEDTDQKRNVLNGVESQMK CCCEEEECCCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHH YLEWLGIDWDEGPGRDGDYGPYYQMERLAIYEKYVNELMSKGLAYKCYMTSEELEAEREA HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH QIARGEAPRYSGAHRNLTVEEREAFEAEGRKPSIRIRVPEGVTYKWTDVVKGDVSFESKD HHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCEEEEHHHEECCCCCCCCC FGDWVIVKQDGIPTYNFAVVVDDHLMKISHVLRGDDHIANTPKQMMVYDALGWDYPEFGH CCCEEEEECCCCCCEEEEEEECHHHHHHHHHHCCCCHHCCCCHHHEEEHHCCCCCCCCCC MTLIYNDQHKKLSKRDESIIQFIEQYADLGYLPAALFNFISLLGWSPVGEEEIFSKEEFI EEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH EMFDAKRLSKSPAVFDQQKLSWINSVYMKKATLDEVVALSLPFLQEAGRLPEAVSVEEAD HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH WATNLIALYKEQMTHGAEIVALTDLFFKDEIEYDEEANAVLSGETVPAVLAEFKQQLEAI HHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHH EDFTPEAIKAATKATQKATGQKGKNLFMPIRVATTGQTHGPELPNAISLIGKERVLKRLT HHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH TLLA HHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA