Click here to switch to the map view.

The map label for this gene is secY [H]

Identifier: 229917338

GI number: 229917338

Start: 1565339

End: 1566628

Strand: Reverse

Name: secY [H]

Synonym: EAT1b_1613

Alternate gene names: 229917338

Gene position: 1566628-1565339 (Counterclockwise)

Preceding gene: 229917339

Following gene: 229917337

Centisome position: 52.22

GC content: 46.67

Gene sequence:

>1290_bases
ATGTTTCAGACGATCTCCAATATGTGGCGCGTGAAAGATATTCGACAGCGTATTCTCTTCACACTCGCAATCATCATCAT
TTTCCGCATCGGGGCTCATATCCCGGTGCCGATGGTGAATACGGATGTGTTGCGTTTTGACTCAGGAGGTCTTCTTGACT
TCTTGAACTTGTTTGGAGGAAATGCTTTACAGAACTTCTCCTTGTTCGCAATGGGGATCATGCCGTACATTACGGCATCG
ATCGTTGTGCAACTTTTACAAATGGACGTCGTTCCAAAGTTTGCCGAATGGGCTAAACAAGGAGAGGCGGGCCGTAAAAA
GTTAGCGACGGTCACGCGCTATGGGACGATCATCTTAGGCTTTGTCCAAGCGACTTCATTGTCGTTTGGATTTAACCGCC
TCTACCCAGGTCTCGTCAATGAGACGTGGGGAACGGCAACTTACTTTGTGATCGCGATTGTACTCACTGCGGGTACAGCG
TTCTTGATGTTCCTTGGTGAAATGACAACGGAGAAAGGTGTTGGGAATGGTATTTCCATCATCATCTTCGCCGGTATCGT
CGCCGGGTTCCCAAGAATCTTCACGCAGATTTATGAAACAAAACTCCAAAACGCTGGAGATGCATTGTTCATTAATATCG
TTTACTTGGTTGTATTGGCACTTGTTATTTTGGCTGTGACGGTTGGGATCATTTATGTTCAACAAGCGGCGCGCAAAATT
CCAATCCAATATGCAAAACGCACGGCGAACCGTACCCCAGTGGGCGGTCAGTCGACGCACTTGCCAATCAAACTAAACGC
AGCAGGTGTTATCCCGGTTATCTTCGCGATTTCCTTCATGGTAACACCACCAACTGTTGCAAGCTTCATTGCTTCGCCGG
AGACAACGCAAAAATTACAAACGTACTTTGACACGACGGCGCCAATCGGAATGTCGATTTACGTTGCGTTAATCATTGCG
TTTGCCTACTTCTATACATTTATTCAGGTCAACCCTGAACAAATGGCAGAAAACCTGCAGAAGCAAGGTGGTTATATTCC
TGGGATTCGTCCTGGGGCGCAAACAGAACAGTACATCACGAAGTTGCTGTATCGATTGACTTTCTTCGGAGCGATCTTCT
TATCGCTCGTGGCGATCATGCCGACAATCTTCATTAAGCTTGCCGGTCTTCCAACTTCCGTTCAAATCGGAGGAACGAGC
TTGTTGATCGTCATCGGGGTAGCCCTCGAAACGATGAAACAAATCGAAAGTCAACTTGTAAAACGACACTATAAAGGCTT
TATCCGTTAA

Upstream 100 bases:

>100_bases
ACGGCAAGCTTGAAACTAAATTGACTGTAAAAGCCAACAAGTTCTCGGGTGCAGCGAAAGAAGCAATCGAAGCAGCTGGC
GGTACAGTTGAGGTGATCTG

Downstream 100 bases:

>100_bases
AGCGGAAGGAAGGGTTGACCCTTCCTTCCTGTCGTGTTTACAAGCCCTTCGTGAAAATCAAAACTGGAGGCTAACCGAGA
TGAATCTAGTACTCATGGGC

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MFQTISNMWRVKDIRQRILFTLAIIIIFRIGAHIPVPMVNTDVLRFDSGGLLDFLNLFGGNALQNFSLFAMGIMPYITAS
IVVQLLQMDVVPKFAEWAKQGEAGRKKLATVTRYGTIILGFVQATSLSFGFNRLYPGLVNETWGTATYFVIAIVLTAGTA
FLMFLGEMTTEKGVGNGISIIIFAGIVAGFPRIFTQIYETKLQNAGDALFINIVYLVVLALVILAVTVGIIYVQQAARKI
PIQYAKRTANRTPVGGQSTHLPIKLNAAGVIPVIFAISFMVTPPTVASFIASPETTQKLQTYFDTTAPIGMSIYVALIIA
FAYFYTFIQVNPEQMAENLQKQGGYIPGIRPGAQTEQYITKLLYRLTFFGAIFLSLVAIMPTIFIKLAGLPTSVQIGGTS
LLIVIGVALETMKQIESQLVKRHYKGFIR

Sequences:

>Translated_429_residues
MFQTISNMWRVKDIRQRILFTLAIIIIFRIGAHIPVPMVNTDVLRFDSGGLLDFLNLFGGNALQNFSLFAMGIMPYITAS
IVVQLLQMDVVPKFAEWAKQGEAGRKKLATVTRYGTIILGFVQATSLSFGFNRLYPGLVNETWGTATYFVIAIVLTAGTA
FLMFLGEMTTEKGVGNGISIIIFAGIVAGFPRIFTQIYETKLQNAGDALFINIVYLVVLALVILAVTVGIIYVQQAARKI
PIQYAKRTANRTPVGGQSTHLPIKLNAAGVIPVIFAISFMVTPPTVASFIASPETTQKLQTYFDTTAPIGMSIYVALIIA
FAYFYTFIQVNPEQMAENLQKQGGYIPGIRPGAQTEQYITKLLYRLTFFGAIFLSLVAIMPTIFIKLAGLPTSVQIGGTS
LLIVIGVALETMKQIESQLVKRHYKGFIR
>Mature_429_residues
MFQTISNMWRVKDIRQRILFTLAIIIIFRIGAHIPVPMVNTDVLRFDSGGLLDFLNLFGGNALQNFSLFAMGIMPYITAS
IVVQLLQMDVVPKFAEWAKQGEAGRKKLATVTRYGTIILGFVQATSLSFGFNRLYPGLVNETWGTATYFVIAIVLTAGTA
FLMFLGEMTTEKGVGNGISIIIFAGIVAGFPRIFTQIYETKLQNAGDALFINIVYLVVLALVILAVTVGIIYVQQAARKI
PIQYAKRTANRTPVGGQSTHLPIKLNAAGVIPVIFAISFMVTPPTVASFIASPETTQKLQTYFDTTAPIGMSIYVALIIA
FAYFYTFIQVNPEQMAENLQKQGGYIPGIRPGAQTEQYITKLLYRLTFFGAIFLSLVAIMPTIFIKLAGLPTSVQIGGTS
LLIVIGVALETMKQIESQLVKRHYKGFIR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=428, Percent_Identity=40.4205607476636, Blast_Score=271, Evalue=7e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47172; Mature: 47172

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS00755 SECY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQTISNMWRVKDIRQRILFTLAIIIIFRIGAHIPVPMVNTDVLRFDSGGLLDFLNLFGG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHCC
NALQNFSLFAMGIMPYITASIVVQLLQMDVVPKFAEWAKQGEAGRKKLATVTRYGTIILG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
FVQATSLSFGFNRLYPGLVNETWGTATYFVIAIVLTAGTAFLMFLGEMTTEKGVGNGISI
HHHHHHHHHCHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
IIFAGIVAGFPRIFTQIYETKLQNAGDALFINIVYLVVLALVILAVTVGIIYVQQAARKI
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PIQYAKRTANRTPVGGQSTHLPIKLNAAGVIPVIFAISFMVTPPTVASFIASPETTQKLQ
CHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHH
TYFDTTAPIGMSIYVALIIAFAYFYTFIQVNPEQMAENLQKQGGYIPGIRPGAQTEQYIT
HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
KLLYRLTFFGAIFLSLVAIMPTIFIKLAGLPTSVQIGGTSLLIVIGVALETMKQIESQLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
KRHYKGFIR
HHHHHCCCC
>Mature Secondary Structure
MFQTISNMWRVKDIRQRILFTLAIIIIFRIGAHIPVPMVNTDVLRFDSGGLLDFLNLFGG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHCC
NALQNFSLFAMGIMPYITASIVVQLLQMDVVPKFAEWAKQGEAGRKKLATVTRYGTIILG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
FVQATSLSFGFNRLYPGLVNETWGTATYFVIAIVLTAGTAFLMFLGEMTTEKGVGNGISI
HHHHHHHHHCHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
IIFAGIVAGFPRIFTQIYETKLQNAGDALFINIVYLVVLALVILAVTVGIIYVQQAARKI
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PIQYAKRTANRTPVGGQSTHLPIKLNAAGVIPVIFAISFMVTPPTVASFIASPETTQKLQ
CHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHH
TYFDTTAPIGMSIYVALIIAFAYFYTFIQVNPEQMAENLQKQGGYIPGIRPGAQTEQYIT
HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
KLLYRLTFFGAIFLSLVAIMPTIFIKLAGLPTSVQIGGTSLLIVIGVALETMKQIESQLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
KRHYKGFIR
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2110998; 2139212; 2113521; 8635744; 9384377 [H]