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The map label for this gene is ydaM [H]

Identifier: 229917205

GI number: 229917205

Start: 1451955

End: 1452854

Strand: Reverse

Name: ydaM [H]

Synonym: EAT1b_1480

Alternate gene names: 229917205

Gene position: 1452854-1451955 (Counterclockwise)

Preceding gene: 229917210

Following gene: 229917202

Centisome position: 48.43

GC content: 47.11

Gene sequence:

>900_bases
ATGACGTTATTCTTCTGGGGGATACTCGTTGGATTTTTGATTGCCTTGTGGCTATACAAACGTCCACAGCCACATGCACC
GTCTCTTTCGTTTATGCATTTCGGGAATCAAACGAAAGATGTCATTTACATTTTTGAAACGAAACCGACTTGGCGTTTCC
GATACATCAGTCCTTCTTTAGATTTATATCTTGGAGAAGGAACGGTGATGCGAAGTTATTCAGATGCACAAGAGTGCTTT
CGGAGAATCCACCCGGACGATCGGCGACTATTACTCGATAAAGTGGCGGGACGCGTCAACTACGAAGAAGCGATTCTTCA
GCGATGGCGCACGAATGACGGCGCTTATGTATGGTTCGAGGAATATACGACTCCAATCTATGAGAATGGTGAAATCGTAG
CGGTTCAAGGTGTGATTCGGAACATCGAAGCAGCCATGACCGAGCGTGAACGTCTCATGTACGAAAGTCGCCACGATAGT
TTGACCGGTGTCTTCAATCGTCGGGCGTTTGAAGAGACGATTGCTCAAGCTGAAAATGTGTGTAACGTCGGAATCATCGT
GCTGGATGTGAACGATTTGAAAGTCGTGAACGACGAGGAAGGACATTCTGCTGGTGACCATTTGTTGAAACGAGTCGGGA
CAATCCTACAAGATATCGAATCCTCCGTATATCGGTTAGGGGGAGATGAATTCGTCTTGTTTCTAGAGATGATGCCTGAG
GATGCATGTGAACGAATGGTTCGTCAAATCGAAGCGACTTGTCAAAAAGAATCGATTTCTGTCGCCATCGGGTTGGCGTG
GGCGTCTCGTCCAGAAACGATTGAGGCGCTTTGGCAACGTGCGGACGATGCCATGTATGAACGGAAGCGACAACAAAAAA
TAGACCTCCTCGACGTGTAA

Upstream 100 bases:

>100_bases
CTCAATTTTCAAAAAAACATTTACCAAATAACAGGAATTGAGACAGGTGTCTGACCTCGAACGTGGTACGATATGGGCGA
ACAGAGAGGAAGTGGATTCA

Downstream 100 bases:

>100_bases
GTTCAAGGAGGTCTATTGGTTTAGCTACTTTGTTCTTCTACATCGGACGGCTCTTCACCCAAATTGTTTAGATAGCGTTC
ATAACGAGAAATGCCGTAGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MTLFFWGILVGFLIALWLYKRPQPHAPSLSFMHFGNQTKDVIYIFETKPTWRFRYISPSLDLYLGEGTVMRSYSDAQECF
RRIHPDDRRLLLDKVAGRVNYEEAILQRWRTNDGAYVWFEEYTTPIYENGEIVAVQGVIRNIEAAMTERERLMYESRHDS
LTGVFNRRAFEETIAQAENVCNVGIIVLDVNDLKVVNDEEGHSAGDHLLKRVGTILQDIESSVYRLGGDEFVLFLEMMPE
DACERMVRQIEATCQKESISVAIGLAWASRPETIEALWQRADDAMYERKRQQKIDLLDV

Sequences:

>Translated_299_residues
MTLFFWGILVGFLIALWLYKRPQPHAPSLSFMHFGNQTKDVIYIFETKPTWRFRYISPSLDLYLGEGTVMRSYSDAQECF
RRIHPDDRRLLLDKVAGRVNYEEAILQRWRTNDGAYVWFEEYTTPIYENGEIVAVQGVIRNIEAAMTERERLMYESRHDS
LTGVFNRRAFEETIAQAENVCNVGIIVLDVNDLKVVNDEEGHSAGDHLLKRVGTILQDIESSVYRLGGDEFVLFLEMMPE
DACERMVRQIEATCQKESISVAIGLAWASRPETIEALWQRADDAMYERKRQQKIDLLDV
>Mature_298_residues
TLFFWGILVGFLIALWLYKRPQPHAPSLSFMHFGNQTKDVIYIFETKPTWRFRYISPSLDLYLGEGTVMRSYSDAQECFR
RIHPDDRRLLLDKVAGRVNYEEAILQRWRTNDGAYVWFEEYTTPIYENGEIVAVQGVIRNIEAAMTERERLMYESRHDSL
TGVFNRRAFEETIAQAENVCNVGIIVLDVNDLKVVNDEEGHSAGDHLLKRVGTILQDIESSVYRLGGDEFVLFLEMMPED
ACERMVRQIEATCQKESISVAIGLAWASRPETIEALWQRADDAMYERKRQQKIDLLDV

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=191, Percent_Identity=30.3664921465969, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI145693134, Length=179, Percent_Identity=31.8435754189944, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787816, Length=185, Percent_Identity=31.8918918918919, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787541, Length=157, Percent_Identity=33.7579617834395, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=27.1604938271605, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 34732; Mature: 34601

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLFFWGILVGFLIALWLYKRPQPHAPSLSFMHFGNQTKDVIYIFETKPTWRFRYISPSL
CEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCC
DLYLGEGTVMRSYSDAQECFRRIHPDDRRLLLDKVAGRVNYEEAILQRWRTNDGAYVWFE
EEEECCCEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEE
EYTTPIYENGEIVAVQGVIRNIEAAMTERERLMYESRHDSLTGVFNRRAFEETIAQAENV
CCCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
CNVGIIVLDVNDLKVVNDEEGHSAGDHLLKRVGTILQDIESSVYRLGGDEFVLFLEMMPE
CCEEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCH
DACERMVRQIEATCQKESISVAIGLAWASRPETIEALWQRADDAMYERKRQQKIDLLDV
HHHHHHHHHHHHHHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TLFFWGILVGFLIALWLYKRPQPHAPSLSFMHFGNQTKDVIYIFETKPTWRFRYISPSL
EEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCC
DLYLGEGTVMRSYSDAQECFRRIHPDDRRLLLDKVAGRVNYEEAILQRWRTNDGAYVWFE
EEEECCCEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEE
EYTTPIYENGEIVAVQGVIRNIEAAMTERERLMYESRHDSLTGVFNRRAFEETIAQAENV
CCCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
CNVGIIVLDVNDLKVVNDEEGHSAGDHLLKRVGTILQDIESSVYRLGGDEFVLFLEMMPE
CCEEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCH
DACERMVRQIEATCQKESISVAIGLAWASRPETIEALWQRADDAMYERKRQQKIDLLDV
HHHHHHHHHHHHHHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]