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The map label for this gene is rbsC [H]

Identifier: 229917157

GI number: 229917157

Start: 1398431

End: 1399432

Strand: Reverse

Name: rbsC [H]

Synonym: EAT1b_1431

Alternate gene names: 229917157

Gene position: 1399432-1398431 (Counterclockwise)

Preceding gene: 229917158

Following gene: 229917155

Centisome position: 46.65

GC content: 51.8

Gene sequence:

>1002_bases
ATGGCACAATTGGTGGTCAAGGAACGAAAACGAATCAGCGGTCATATCGGTCAGTATGGGACGTTACTCGCAATCCTTGG
TTTGATTGCGGTCTTTACCGTGACGAACGATCAATTTCTGACATACGCAAACTTTAGTGACATCATCAAATCGGTTTCAA
TCGTTTCGCTACTTGCCCTCGGCGTCACGTTTTCGCTCATCGTCGGAGGATTCGACTTGTCGGTCGGCTCGACGGCGAGT
CTTGCGACAATCGGGGCAGCGGCAAGTCTCGTCCTTCATCGACAAGAGCTTCTCGTCGCCCTGCTGATTCCACTTGCACT
CGGGATTCTCGTCGGGCTGTTGAACGCGCTCGTCACAATCAAATTCCGATTACCGGATTTACTAGCGACACTCGCCATCA
TGTACGTCATTAACGGGATTCAGTTGACGTATACGAAAGGATTCTCGATTTATGACAACATGCCGATTGAAGGGGGGACG
GCGCCAGGGCGTTTCATCCCGTCATTTCTATTCATCGGTCAAGGGACGATCGGTCCGATTCCGTTCGTCGCCCTGCTCAT
GCTGGTGTTCTTTATCGGAGCACATCTATTCTTGACTTATACGCGGACCGGGCGTGAATTTTATTACGTCGGGTCGAACG
CCGAAGCGGCCCGTCGTTCCGGGATCGCCGTGAATCGCATCAAGTTGTACGCCTACGTACTCAGCGGATTGTTTGCAGCC
ATCGGCGGAATCATTCTTGCATCTCGGATTGGTACGGGACAAGTCTCGGCTGGAGCACCTCTTTTGATGGACGCTGTCGC
GGCTGCCTACATCGGCTACGCCGTCTTTGGGACAGGGCGCCCGAACGTGATCGGGACATTGATTGGAGCTATTTTGATTG
GAATTCTCTTGAACGGACTGACGATGTGGGACGTGCCGTATTATGCGCAAGACATCGTCAAAGGAACGATTTTAATTGGA
GCGCTCGGTCTTTCTTATATTCAGAAGAAACAGCGGACATGA

Upstream 100 bases:

>100_bases
GTATTGTTCACGTCAAGTGAGCGACATGAACTCGAACGGGTCGCCAATCGAATCGTTTGGCTCGACCGTGGACAAATTGT
AGAGAAAGGAGGCGTGTAAG

Downstream 100 bases:

>100_bases
CAAAACCCCCGGACATCAGTTGTTCGGGGGTTCGCTTTGTTCACGTGTCATTGAAAGAAATGGATACACACCACCATTCG
TCTCCTGCATGAACGTGTCT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MAQLVVKERKRISGHIGQYGTLLAILGLIAVFTVTNDQFLTYANFSDIIKSVSIVSLLALGVTFSLIVGGFDLSVGSTAS
LATIGAAASLVLHRQELLVALLIPLALGILVGLLNALVTIKFRLPDLLATLAIMYVINGIQLTYTKGFSIYDNMPIEGGT
APGRFIPSFLFIGQGTIGPIPFVALLMLVFFIGAHLFLTYTRTGREFYYVGSNAEAARRSGIAVNRIKLYAYVLSGLFAA
IGGIILASRIGTGQVSAGAPLLMDAVAAAYIGYAVFGTGRPNVIGTLIGAILIGILLNGLTMWDVPYYAQDIVKGTILIG
ALGLSYIQKKQRT

Sequences:

>Translated_333_residues
MAQLVVKERKRISGHIGQYGTLLAILGLIAVFTVTNDQFLTYANFSDIIKSVSIVSLLALGVTFSLIVGGFDLSVGSTAS
LATIGAAASLVLHRQELLVALLIPLALGILVGLLNALVTIKFRLPDLLATLAIMYVINGIQLTYTKGFSIYDNMPIEGGT
APGRFIPSFLFIGQGTIGPIPFVALLMLVFFIGAHLFLTYTRTGREFYYVGSNAEAARRSGIAVNRIKLYAYVLSGLFAA
IGGIILASRIGTGQVSAGAPLLMDAVAAAYIGYAVFGTGRPNVIGTLIGAILIGILLNGLTMWDVPYYAQDIVKGTILIG
ALGLSYIQKKQRT
>Mature_332_residues
AQLVVKERKRISGHIGQYGTLLAILGLIAVFTVTNDQFLTYANFSDIIKSVSIVSLLALGVTFSLIVGGFDLSVGSTASL
ATIGAAASLVLHRQELLVALLIPLALGILVGLLNALVTIKFRLPDLLATLAIMYVINGIQLTYTKGFSIYDNMPIEGGTA
PGRFIPSFLFIGQGTIGPIPFVALLMLVFFIGAHLFLTYTRTGREFYYVGSNAEAARRSGIAVNRIKLYAYVLSGLFAAI
GGIILASRIGTGQVSAGAPLLMDAVAAAYIGYAVFGTGRPNVIGTLIGAILIGILLNGLTMWDVPYYAQDIVKGTILIGA
LGLSYIQKKQRT

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=329, Percent_Identity=34.3465045592705, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1788896, Length=334, Percent_Identity=30.2395209580838, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI145693152, Length=320, Percent_Identity=32.5, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1789992, Length=139, Percent_Identity=43.1654676258993, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1790524, Length=316, Percent_Identity=27.8481012658228, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787793, Length=287, Percent_Identity=28.9198606271777, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788471, Length=338, Percent_Identity=30.4733727810651, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1787794, Length=311, Percent_Identity=30.5466237942122, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI145693214, Length=260, Percent_Identity=34.6153846153846, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87082395, Length=269, Percent_Identity=27.8810408921933, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35282; Mature: 35150

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQLVVKERKRISGHIGQYGTLLAILGLIAVFTVTNDQFLTYANFSDIIKSVSIVSLLAL
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHH
GVTFSLIVGGFDLSVGSTASLATIGAAASLVLHRQELLVALLIPLALGILVGLLNALVTI
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
KFRLPDLLATLAIMYVINGIQLTYTKGFSIYDNMPIEGGTAPGRFIPSFLFIGQGTIGPI
HHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCHH
PFVALLMLVFFIGAHLFLTYTRTGREFYYVGSNAEAARRSGIAVNRIKLYAYVLSGLFAA
HHHHHHHHHHHHHHHHEEEEEECCCEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHH
IGGIILASRIGTGQVSAGAPLLMDAVAAAYIGYAVFGTGRPNVIGTLIGAILIGILLNGL
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCC
TMWDVPYYAQDIVKGTILIGALGLSYIQKKQRT
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AQLVVKERKRISGHIGQYGTLLAILGLIAVFTVTNDQFLTYANFSDIIKSVSIVSLLAL
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHH
GVTFSLIVGGFDLSVGSTASLATIGAAASLVLHRQELLVALLIPLALGILVGLLNALVTI
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
KFRLPDLLATLAIMYVINGIQLTYTKGFSIYDNMPIEGGTAPGRFIPSFLFIGQGTIGPI
HHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCHH
PFVALLMLVFFIGAHLFLTYTRTGREFYYVGSNAEAARRSGIAVNRIKLYAYVLSGLFAA
HHHHHHHHHHHHHHHHEEEEEECCCEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHH
IGGIILASRIGTGQVSAGAPLLMDAVAAAYIGYAVFGTGRPNVIGTLIGAILIGILLNGL
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCC
TMWDVPYYAQDIVKGTILIGALGLSYIQKKQRT
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]