Click here to switch to the map view.

The map label for this gene is yjcC [C]

Identifier: 229917110

GI number: 229917110

Start: 1355180

End: 1356118

Strand: Direct

Name: yjcC [C]

Synonym: EAT1b_1384

Alternate gene names: 229917110

Gene position: 1355180-1356118 (Clockwise)

Preceding gene: 229917105

Following gene: 229917111

Centisome position: 45.17

GC content: 49.31

Gene sequence:

>939_bases
ATGTGGTCACCCTGCGCTTCTTGTAACACAACGATTCCTTTGATTGCTCAAGGGACACTCGTCACAACATTCAAGGAATA
CCCTTATAAATCATTTGAAGAACTCGATACGCTCCTTCTGCAGGCGGAGGGAACGGTATACTGTGTCGATCCTGCATCGA
ACGGTCAGACCCCGCCGCTTGAGGTCGAAGTTTTAAAGGATCAGCTTGCCAATCGGCACATCATTGAACAGATTCAGCAT
GGCACGTTCGAGAGTCACCTCCAGCCAATCATCTTCCTCGATTCTACGGAAACATTCGGGTACGAGGCACTCCTCCGTAG
CGGCGCCAACATCTCGCCCTATGATTTATTCCGGACGGCAAATCGTTTCGGTCTTCATTCGAAGCTCGATCAACGCGCCC
GCGCGGAAGCAATCAAAGCGACATTTGAAGCCGTCGCCCCTCACCAAAAGACATTCATCAACTTCTTACCCTCGACGATT
TACAACCCGGACTATTGTCTCCAGCACACGTTCGATATCATCGACCGATATGACCTCAGCCCGGACCGTTTTATCTTTGA
GGTCGTAGAGACGGAGAAGGTACATGACGTCGACCATCTCCAACACGTGTTTTCAACATATAAAAAGCGGGGGATGAAAG
TCGCGCTAGACGATGTCGGGGCAGGCTTCTCAACCATCGACATGTTGAAGCGACTCGAACCGGACTATGTCAAAATTGAC
CGTTCCTATATCTCGTTTTGTGATGAAGACGCTGAAAAACGCGCTTTCCTAAGACAAGTGCGTGCGTTAACCCACTCGAT
GGGGATCACTCTTCTTGCTGAAGGCGTAGAACGTATGGAAGAGGCAGATGTCTGTCGTGAGCTCGGATTCGATTTAGCGC
AAGGATATTTCTTCGGAAAACCGGCTCCTGCTAATCAATACAAGATTGAAATCGCATAA

Upstream 100 bases:

>100_bases
TTGCACGATTTTTTTGATGAATGTCTCCGGAATGTGAGTTTTTTGTGAGATACGACCGATATACTGAATGAACCAATTCT
GTATCGAAAGGTGGAATAGT

Downstream 100 bases:

>100_bases
GTCATCACGTTCAAAAGCACAGGAATCGACCTCGTCGACATCCGGTGCTTTTCTTTTTTAGTCACAGAAATTGTGTCGCC
CTCCCCTTGTGGTTTCATCT

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MWSPCASCNTTIPLIAQGTLVTTFKEYPYKSFEELDTLLLQAEGTVYCVDPASNGQTPPLEVEVLKDQLANRHIIEQIQH
GTFESHLQPIIFLDSTETFGYEALLRSGANISPYDLFRTANRFGLHSKLDQRARAEAIKATFEAVAPHQKTFINFLPSTI
YNPDYCLQHTFDIIDRYDLSPDRFIFEVVETEKVHDVDHLQHVFSTYKKRGMKVALDDVGAGFSTIDMLKRLEPDYVKID
RSYISFCDEDAEKRAFLRQVRALTHSMGITLLAEGVERMEEADVCRELGFDLAQGYFFGKPAPANQYKIEIA

Sequences:

>Translated_312_residues
MWSPCASCNTTIPLIAQGTLVTTFKEYPYKSFEELDTLLLQAEGTVYCVDPASNGQTPPLEVEVLKDQLANRHIIEQIQH
GTFESHLQPIIFLDSTETFGYEALLRSGANISPYDLFRTANRFGLHSKLDQRARAEAIKATFEAVAPHQKTFINFLPSTI
YNPDYCLQHTFDIIDRYDLSPDRFIFEVVETEKVHDVDHLQHVFSTYKKRGMKVALDDVGAGFSTIDMLKRLEPDYVKID
RSYISFCDEDAEKRAFLRQVRALTHSMGITLLAEGVERMEEADVCRELGFDLAQGYFFGKPAPANQYKIEIA
>Mature_312_residues
MWSPCASCNTTIPLIAQGTLVTTFKEYPYKSFEELDTLLLQAEGTVYCVDPASNGQTPPLEVEVLKDQLANRHIIEQIQH
GTFESHLQPIIFLDSTETFGYEALLRSGANISPYDLFRTANRFGLHSKLDQRARAEAIKATFEAVAPHQKTFINFLPSTI
YNPDYCLQHTFDIIDRYDLSPDRFIFEVVETEKVHDVDHLQHVFSTYKKRGMKVALDDVGAGFSTIDMLKRLEPDYVKID
RSYISFCDEDAEKRAFLRQVRALTHSMGITLLAEGVERMEEADVCRELGFDLAQGYFFGKPAPANQYKIEIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=223, Percent_Identity=26.9058295964126, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788849, Length=246, Percent_Identity=28.0487804878049, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87081845, Length=283, Percent_Identity=28.6219081272085, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI87081743, Length=253, Percent_Identity=26.4822134387352, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081980, Length=240, Percent_Identity=29.1666666666667, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081921, Length=282, Percent_Identity=24.822695035461, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082096, Length=244, Percent_Identity=23.7704918032787, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI226510982, Length=258, Percent_Identity=24.4186046511628, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787410, Length=212, Percent_Identity=25.4716981132075, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788502, Length=250, Percent_Identity=25.2, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786507, Length=137, Percent_Identity=24.8175182481752, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787055, Length=271, Percent_Identity=24.7232472324723, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787541, Length=280, Percent_Identity=22.1428571428571, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 35511; Mature: 35511

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSPCASCNTTIPLIAQGTLVTTFKEYPYKSFEELDTLLLQAEGTVYCVDPASNGQTPPL
CCCCCCCCCCCCEEEECCCEEEHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
EVEVLKDQLANRHIIEQIQHGTFESHLQPIIFLDSTETFGYEALLRSGANISPYDLFRTA
HHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHH
NRFGLHSKLDQRARAEAIKATFEAVAPHQKTFINFLPSTIYNPDYCLQHTFDIIDRYDLS
HHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
PDRFIFEVVETEKVHDVDHLQHVFSTYKKRGMKVALDDVGAGFSTIDMLKRLEPDYVKID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCHHHHHHHHHCCCCCEEHH
RSYISFCDEDAEKRAFLRQVRALTHSMGITLLAEGVERMEEADVCRELGFDLAQGYFFGK
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCEECCC
PAPANQYKIEIA
CCCCCCEEEEEC
>Mature Secondary Structure
MWSPCASCNTTIPLIAQGTLVTTFKEYPYKSFEELDTLLLQAEGTVYCVDPASNGQTPPL
CCCCCCCCCCCCEEEECCCEEEHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
EVEVLKDQLANRHIIEQIQHGTFESHLQPIIFLDSTETFGYEALLRSGANISPYDLFRTA
HHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHH
NRFGLHSKLDQRARAEAIKATFEAVAPHQKTFINFLPSTIYNPDYCLQHTFDIIDRYDLS
HHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
PDRFIFEVVETEKVHDVDHLQHVFSTYKKRGMKVALDDVGAGFSTIDMLKRLEPDYVKID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCHHHHHHHHHCCCCCEEHH
RSYISFCDEDAEKRAFLRQVRALTHSMGITLLAEGVERMEEADVCRELGFDLAQGYFFGK
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCEECCC
PAPANQYKIEIA
CCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]