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The map label for this gene is atpD [H]

Identifier: 229917035

GI number: 229917035

Start: 1284636

End: 1286054

Strand: Reverse

Name: atpD [H]

Synonym: EAT1b_1309

Alternate gene names: 229917035

Gene position: 1286054-1284636 (Counterclockwise)

Preceding gene: 229917036

Following gene: 229917034

Centisome position: 42.87

GC content: 51.23

Gene sequence:

>1419_bases
ATGAACGAATACGGCATGAAAGGCCGCGTAGTCGCAGTCATGGGCCCAGTTATCGACGTAAAGTTCGACAACCACTTACC
GAACATCTACAACGCTCTCAAAGTCACACACGTGGCAGCGACAGCGGACGATGTTAGTGTCGACTTGACGCTCGAAGTAG
CTGTTCACCTTGGTGACGACACGGTCCGTACGATTGCGATGGACTCAACTGACGGCGTTCGCCGCGGTATGGAAGTACTT
GACTTAGGATCACCGATTTCGGTACCAGTTGGAGAAGCGACACTTGGACGTGTCTTCAACGTTCTCGGTAACCCGATCGA
TGATAAAGAAGTGGCAGCTGACGTGCTTCGTGCACCGATTCACCGTCAAGCGCCAACATTTGACGAATTGTCAACGAAAG
TTGAAATCCTTGAAACAGGGATTAAAGTCGTCGACCTTCTCGCACCATACATCAAAGGTGGTAAAATCGGCCTCTTCGGT
GGTGCCGGTGTAGGGAAAACCGTCCTCATCCAGGAACTCATCAACAACATCGCGCAAGAGCACAGCGGGATTTCTGTATT
CGCAGGAGTCGGTGAGCGTACGCGTGAAGGGAATGACTTGTTCCACGAGATGACGGACTCAGGCGTTATCAAGCAAACAG
CGATGGTCTTCGGTCAGATGAACGAACCACCTGGTGCACGTCTCCGTGTTGCCTTGACTGGTTTGACAATGGCAGAGTAC
TTCCGTGACGAGCAAGGACAAGACGTTCTTCTCTTCGTTGATAACATCTTCCGTTTCACACAAGCAGGTTCTGAGGTTTC
AGCCCTTCTCGGACGTATGCCATCGGCGGTAGGTTACCAGCCGACACTTGCGACTGAAATGGGTATGCTTCAAGAGCGAA
TCACATCGACTGCAAAAGGATCGGTAACTTCGATTCAAGCGGTTTATGTACCAGCCGATGACTACACGGACCCGGCTCCG
GCAACAACGTTCGCCCACCTTGATGCAACAACAAACCTTGAGCGTCGTCTTTCGGAGATGGGGATTTACCCAGCCGTTGA
CCCGCTCGCATCGACTTCACGTGCCCTCTCTCCTGAAATCGTAGGGAAAGAGCACTATGAGGTTGCACGTAACGTTCAAC
AGACGCTTCAGCGTTACAAAGAACTTCAAGACATCATCGCTATCCTCGGGATGGACGAGTTGTCTGAAGACGACAAACTC
ACGGTTCACCGTGCACGTCGTATTCAGTTCTTCTTATCACAAAACTTCCACGTGGCTGAGCAGTTCACGGGCCAAAAAGG
TTCGTACGTGCCAGTCAAAGAGACAGTACGCGGCTTCAAAGAGATCCTCGAAGGTAAACACGACGATCTTCCTGAAGATG
CATTCCGTCTCGTCGGTCCAATCGAAGACGTCATCGAAAAAGCGAAGACGTTGGTCTAA

Upstream 100 bases:

>100_bases
GCGCGTCAAGCAGCGATCACACAAGAAATCACAGAGATTGTCGGAGGTGCGTCGGCGCTTGAATAAGCGCACGCCCTCTA
GATTGTAGGAGGCTAACACG

Downstream 100 bases:

>100_bases
GACCTACGCGGAAGGGGGAAACTAGACGATGAATACTGTTCACGTCAACGTCGTCACCCCGGATGGTGCAGCCTTTGAAG
GAGACGCACGAATGGTCATC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MNEYGMKGRVVAVMGPVIDVKFDNHLPNIYNALKVTHVAATADDVSVDLTLEVAVHLGDDTVRTIAMDSTDGVRRGMEVL
DLGSPISVPVGEATLGRVFNVLGNPIDDKEVAADVLRAPIHRQAPTFDELSTKVEILETGIKVVDLLAPYIKGGKIGLFG
GAGVGKTVLIQELINNIAQEHSGISVFAGVGERTREGNDLFHEMTDSGVIKQTAMVFGQMNEPPGARLRVALTGLTMAEY
FRDEQGQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGMLQERITSTAKGSVTSIQAVYVPADDYTDPAP
ATTFAHLDATTNLERRLSEMGIYPAVDPLASTSRALSPEIVGKEHYEVARNVQQTLQRYKELQDIIAILGMDELSEDDKL
TVHRARRIQFFLSQNFHVAEQFTGQKGSYVPVKETVRGFKEILEGKHDDLPEDAFRLVGPIEDVIEKAKTLV

Sequences:

>Translated_472_residues
MNEYGMKGRVVAVMGPVIDVKFDNHLPNIYNALKVTHVAATADDVSVDLTLEVAVHLGDDTVRTIAMDSTDGVRRGMEVL
DLGSPISVPVGEATLGRVFNVLGNPIDDKEVAADVLRAPIHRQAPTFDELSTKVEILETGIKVVDLLAPYIKGGKIGLFG
GAGVGKTVLIQELINNIAQEHSGISVFAGVGERTREGNDLFHEMTDSGVIKQTAMVFGQMNEPPGARLRVALTGLTMAEY
FRDEQGQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGMLQERITSTAKGSVTSIQAVYVPADDYTDPAP
ATTFAHLDATTNLERRLSEMGIYPAVDPLASTSRALSPEIVGKEHYEVARNVQQTLQRYKELQDIIAILGMDELSEDDKL
TVHRARRIQFFLSQNFHVAEQFTGQKGSYVPVKETVRGFKEILEGKHDDLPEDAFRLVGPIEDVIEKAKTLV
>Mature_472_residues
MNEYGMKGRVVAVMGPVIDVKFDNHLPNIYNALKVTHVAATADDVSVDLTLEVAVHLGDDTVRTIAMDSTDGVRRGMEVL
DLGSPISVPVGEATLGRVFNVLGNPIDDKEVAADVLRAPIHRQAPTFDELSTKVEILETGIKVVDLLAPYIKGGKIGLFG
GAGVGKTVLIQELINNIAQEHSGISVFAGVGERTREGNDLFHEMTDSGVIKQTAMVFGQMNEPPGARLRVALTGLTMAEY
FRDEQGQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGMLQERITSTAKGSVTSIQAVYVPADDYTDPAP
ATTFAHLDATTNLERRLSEMGIYPAVDPLASTSRALSPEIVGKEHYEVARNVQQTLQRYKELQDIIAILGMDELSEDDKL
TVHRARRIQFFLSQNFHVAEQFTGQKGSYVPVKETVRGFKEILEGKHDDLPEDAFRLVGPIEDVIEKAKTLV

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=470, Percent_Identity=69.1489361702128, Blast_Score=652, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=319, Percent_Identity=30.0940438871473, Blast_Score=131, Evalue=2e-30,
Organism=Homo sapiens, GI19913428, Length=356, Percent_Identity=25.561797752809, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI19913426, Length=355, Percent_Identity=24.5070422535211, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI50345984, Length=423, Percent_Identity=26.0047281323877, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI4757810, Length=423, Percent_Identity=26.0047281323877, Blast_Score=101, Evalue=1e-21,
Organism=Escherichia coli, GI1790170, Length=465, Percent_Identity=66.8817204301075, Blast_Score=621, Evalue=1e-179,
Organism=Escherichia coli, GI1788251, Length=317, Percent_Identity=30.9148264984227, Blast_Score=131, Evalue=8e-32,
Organism=Escherichia coli, GI1790172, Length=349, Percent_Identity=27.5071633237822, Blast_Score=108, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=470, Percent_Identity=66.5957446808511, Blast_Score=628, Evalue=1e-180,
Organism=Caenorhabditis elegans, GI17565854, Length=348, Percent_Identity=30.1724137931034, Blast_Score=139, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI71988080, Length=377, Percent_Identity=27.3209549071618, Blast_Score=111, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71988063, Length=377, Percent_Identity=27.3209549071618, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17570191, Length=415, Percent_Identity=23.855421686747, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17510931, Length=334, Percent_Identity=25.1497005988024, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71988074, Length=329, Percent_Identity=26.7477203647416, Blast_Score=89, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6322581, Length=466, Percent_Identity=69.3133047210301, Blast_Score=639, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=355, Percent_Identity=25.9154929577465, Blast_Score=112, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6319370, Length=377, Percent_Identity=28.1167108753316, Blast_Score=102, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6320016, Length=234, Percent_Identity=29.0598290598291, Blast_Score=95, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24638766, Length=471, Percent_Identity=68.1528662420382, Blast_Score=642, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=478, Percent_Identity=65.8995815899582, Blast_Score=620, Evalue=1e-178,
Organism=Drosophila melanogaster, GI20129479, Length=347, Percent_Identity=28.2420749279539, Blast_Score=142, Evalue=7e-34,
Organism=Drosophila melanogaster, GI24583988, Length=353, Percent_Identity=28.0453257790368, Blast_Score=132, Evalue=4e-31,
Organism=Drosophila melanogaster, GI24583986, Length=353, Percent_Identity=28.0453257790368, Blast_Score=132, Evalue=4e-31,
Organism=Drosophila melanogaster, GI24583984, Length=353, Percent_Identity=28.0453257790368, Blast_Score=132, Evalue=4e-31,
Organism=Drosophila melanogaster, GI24583992, Length=321, Percent_Identity=29.2834890965732, Blast_Score=132, Evalue=4e-31,
Organism=Drosophila melanogaster, GI281361666, Length=400, Percent_Identity=24.75, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24646341, Length=400, Percent_Identity=24.75, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI17136796, Length=400, Percent_Identity=24.75, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24658560, Length=377, Percent_Identity=27.8514588859416, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24638768, Length=97, Percent_Identity=56.701030927835, Blast_Score=106, Evalue=4e-23,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 51491; Mature: 51491

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEYGMKGRVVAVMGPVIDVKFDNHLPNIYNALKVTHVAATADDVSVDLTLEVAVHLGDD
CCCCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHEECCCCCEEEEEEEEEEEECCC
TVRTIAMDSTDGVRRGMEVLDLGSPISVPVGEATLGRVFNVLGNPIDDKEVAADVLRAPI
CEEEEEECCCHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCH
HRQAPTFDELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQE
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
HSGISVFAGVGERTREGNDLFHEMTDSGVIKQTAMVFGQMNEPPGARLRVALTGLTMAEY
CCCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHH
FRDEQGQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGMLQERITSTAKG
HCCCCCCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
SVTSIQAVYVPADDYTDPAPATTFAHLDATTNLERRLSEMGIYPAVDPLASTSRALSPEI
CCEEEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHCCCCHH
VGKEHYEVARNVQQTLQRYKELQDIIAILGMDELSEDDKLTVHRARRIQFFLSQNFHVAE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCCHHH
QFTGQKGSYVPVKETVRGFKEILEGKHDDLPEDAFRLVGPIEDVIEKAKTLV
HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure
MNEYGMKGRVVAVMGPVIDVKFDNHLPNIYNALKVTHVAATADDVSVDLTLEVAVHLGDD
CCCCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHEECCCCCEEEEEEEEEEEECCC
TVRTIAMDSTDGVRRGMEVLDLGSPISVPVGEATLGRVFNVLGNPIDDKEVAADVLRAPI
CEEEEEECCCHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCH
HRQAPTFDELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQE
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
HSGISVFAGVGERTREGNDLFHEMTDSGVIKQTAMVFGQMNEPPGARLRVALTGLTMAEY
CCCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHH
FRDEQGQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGMLQERITSTAKG
HCCCCCCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
SVTSIQAVYVPADDYTDPAPATTFAHLDATTNLERRLSEMGIYPAVDPLASTSRALSPEI
CCEEEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHCCCCHH
VGKEHYEVARNVQQTLQRYKELQDIIAILGMDELSEDDKLTVHRARRIQFFLSQNFHVAE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCCHHH
QFTGQKGSYVPVKETVRGFKEILEGKHDDLPEDAFRLVGPIEDVIEKAKTLV
HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA