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The map label for this gene is yebA [H]

Identifier: 229916982

GI number: 229916982

Start: 1230473

End: 1231189

Strand: Reverse

Name: yebA [H]

Synonym: EAT1b_1256

Alternate gene names: 229916982

Gene position: 1231189-1230473 (Counterclockwise)

Preceding gene: 229916983

Following gene: 229916978

Centisome position: 41.04

GC content: 49.23

Gene sequence:

>717_bases
ATGAAACGAAAGCTATTCTCTCTTTTCTGTGCCGTTCTTCTCACAGTCGGAATCTTCACTCCGGCAGGTACTCCGGCTGA
AGCAGCCACCACGTATTATGTCAAAGTCACGACCAACAGTTTAAACGTCCGTTCGGGTCCGGGCACGACGTATGCGATCG
TCGGTAGCGCGAAGTTGGGACAGTCGTTCAAATATCTCGGCGTGAGTGGGGGATGGACGAAAATTAATTTCAACGGGACA
TCCCGCTACGTATCCAGTACATATGTGAAGAAGTACAGTGTTTCCACGCTTTCAACGACATCGACTGCGAAAATGATCAT
CCCGACAAAAGGGACGTTGACACAAAAGTATGGTCCCGCGAGTGGGCAGTACGGTTATACGTTCCATAACGGCATTGACT
TGGCTGCTCCAAGAGGAACACCGGTCGTGTCAGCCGCTTATGGAAAAGTCATCGTTTCTCGAAACTATGGGGCTTACGGT
AACCACGTCATGATGAGCCATCAGTTGAACGGACAAACATACATCACAGTATACGCACACCTTGATCGTCTCAATGTCGT
CACAGGACAGACGCTAGCAAAAGGAGCAACGATTGGAACGGTCGGGAATACCGGGAACTCGTTCGGGAATCATCTCCACT
TCGAAGTGCATCGGAACAGCTATGTGTATAGCAGTTCATCTCCTGCCAACAGTATCAATCCGTATACGATGTTCTGA

Upstream 100 bases:

>100_bases
AATGACATATTTGTCGGTTCGTTTTGGTGGTAAAATTTTTTCAGTTAGATAATATAAAAAATAAAAATTTAAATACATAA
TTGAAAGGATTTACCACATC

Downstream 100 bases:

>100_bases
CATAAAAGCACGCGCTCCCAAAGGATGGGGCGCGTGCTTTTTGGTTAATGCCATGTCGTTTGTTTGTTTCGCTCGATTTG
GTTGGCGGCGATGAGGCTGA

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKRKLFSLFCAVLLTVGIFTPAGTPAEAATTYYVKVTTNSLNVRSGPGTTYAIVGSAKLGQSFKYLGVSGGWTKINFNGT
SRYVSSTYVKKYSVSTLSTTSTAKMIIPTKGTLTQKYGPASGQYGYTFHNGIDLAAPRGTPVVSAAYGKVIVSRNYGAYG
NHVMMSHQLNGQTYITVYAHLDRLNVVTGQTLAKGATIGTVGNTGNSFGNHLHFEVHRNSYVYSSSSPANSINPYTMF

Sequences:

>Translated_238_residues
MKRKLFSLFCAVLLTVGIFTPAGTPAEAATTYYVKVTTNSLNVRSGPGTTYAIVGSAKLGQSFKYLGVSGGWTKINFNGT
SRYVSSTYVKKYSVSTLSTTSTAKMIIPTKGTLTQKYGPASGQYGYTFHNGIDLAAPRGTPVVSAAYGKVIVSRNYGAYG
NHVMMSHQLNGQTYITVYAHLDRLNVVTGQTLAKGATIGTVGNTGNSFGNHLHFEVHRNSYVYSSSSPANSINPYTMF
>Mature_238_residues
MKRKLFSLFCAVLLTVGIFTPAGTPAEAATTYYVKVTTNSLNVRSGPGTTYAIVGSAKLGQSFKYLGVSGGWTKINFNGT
SRYVSSTYVKKYSVSTLSTTSTAKMIIPTKGTLTQKYGPASGQYGYTFHNGIDLAAPRGTPVVSAAYGKVIVSRNYGAYG
NHVMMSHQLNGQTYITVYAHLDRLNVVTGQTLAKGATIGTVGNTGNSFGNHLHFEVHRNSYVYSSSSPANSINPYTMF

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=108, Percent_Identity=40.7407407407407, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082174, Length=113, Percent_Identity=38.0530973451327, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789099, Length=111, Percent_Identity=32.4324324324324, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 25483; Mature: 25483

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKLFSLFCAVLLTVGIFTPAGTPAEAATTYYVKVTTNSLNVRSGPGTTYAIVGSAKLG
CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECEEEEECCCCCEEEEEECHHCC
QSFKYLGVSGGWTKINFNGTSRYVSSTYVKKYSVSTLSTTSTAKMIIPTKGTLTQKYGPA
CCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCEEECCCCC
SGQYGYTFHNGIDLAAPRGTPVVSAAYGKVIVSRNYGAYGNHVMMSHQLNGQTYITVYAH
CCCCCEEEECCEEEECCCCCCEEEECCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEE
LDRLNVVTGQTLAKGATIGTVGNTGNSFGNHLHFEVHRNSYVYSSSSPANSINPYTMF
ECEEEEEECCHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCEEEC
>Mature Secondary Structure
MKRKLFSLFCAVLLTVGIFTPAGTPAEAATTYYVKVTTNSLNVRSGPGTTYAIVGSAKLG
CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECEEEEECCCCCEEEEEECHHCC
QSFKYLGVSGGWTKINFNGTSRYVSSTYVKKYSVSTLSTTSTAKMIIPTKGTLTQKYGPA
CCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCEEECCCCC
SGQYGYTFHNGIDLAAPRGTPVVSAAYGKVIVSRNYGAYGNHVMMSHQLNGQTYITVYAH
CCCCCEEEECCEEEECCCCCCEEEECCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEE
LDRLNVVTGQTLAKGATIGTVGNTGNSFGNHLHFEVHRNSYVYSSSSPANSINPYTMF
ECEEEEEECCHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]