| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
Click here to switch to the map view.
The map label for this gene is yhaP [H]
Identifier: 229916682
GI number: 229916682
Start: 902189
End: 903382
Strand: Direct
Name: yhaP [H]
Synonym: EAT1b_0955
Alternate gene names: 229916682
Gene position: 902189-903382 (Clockwise)
Preceding gene: 229916681
Following gene: 229916683
Centisome position: 30.07
GC content: 52.93
Gene sequence:
>1194_bases ATGTTTCATAACTTTGGACCACTCTATGCGTTCACACTCAAATCGAGAATTCGTTCGAAAGCATTCCTCATCTCGACGGC GTTGACGATCCTGTTCATCTTCGGGTTTACGAACATCGACCGCATCATGTCCTCCTTCGAGGACTCTGAACAGGCGAGTG CTCTCGTCGTATCTGAAAACACAGAACTCGTCGACACGATGAAGTCTCTCGGCTATGAAGACGTCGCCTCTAGCGAAATC ACGGAAGAAGAGGCGCGGGCCGGCATCAATGACGGGGAATACGGCGTCGTCGCCTTTGTTGACGGCTATGATGCCCGCGT CATCTCCGAACGCCCGGAACAGGAGTTCACGACTCTTTTACAAACATCCTTACAACAGTTACGCAATGCGGAATTGATCG AATCGTCCGATGTCGACCCGGCCGTCATCGCTGCCCTCAGCGAACCGATTCAACTCGACGAGTCCTATCTCGGACGCGGT GGAGAGAACTCGGATGAGCTCCTCTCGTCCTCGGCGCTCGTTTACGTCATGTTGATGCTCTTGTACATCTCGATCATCAC GTACGGATCGATGATTTCAACAGAAGTGACGACGGAGAAGTCATCGCGTGTCATGGAGCTCATCATCTCGACGACTCATC CGGTGACCCATATGCTTGCGAAAGTGACCGCCATCGGGACGCTTGCCCTCATCCAAATCGGAATCTTCCTCGGGTTTGGT TATGTGAGTGCGAGTGGTAGCGAACTGGCGACGACGGTCATCGAGAACGCCGGCAACGCACGGGCCGTCATCTATCTACT CGTCTTCTTCTTGCTCGGATACTTGTTGTACGCCTCACTCTTCGCCGTCCTCGGCTCACTCGTCAGCCGAGTCGAAGAGT CACAACAAATGGTCATGCCGGTCATCATGCTCCTCGTCGCCGCATTCTTAGTGGCGATGTTCGGTTTGAACAACCCGGAT GCGACCATCGTGACCATCCTCTCATTCGTCCCGTTTTTCGCTCCGATGCTCATGTTCCTTCGCGTCATGCTCGTCGATGT GGCCGTATGGGAAGTGGCGCTCTCCATCGGGTTACTCATCGGAACGATCGGTGTCACGTTGTGGATTGGATCGAAATTCT ATCGTGGTGGCGTCTTGTTCTATGGAACGAACGCCATTAAACAATGGCGACAAATATTACAAAACCGTCAATAA
Upstream 100 bases:
>100_bases GCCGTCCTATCGGCACTCGTCCGTCATCAGGCGAACGTGAAGACGTTCATGCGCCAACCGGTATCGCTCAATGACATCTT CATCAAGGAGGTCGGACAGC
Downstream 100 bases:
>100_bases CGTTTACAGCAAATTCGTTTTCGTTTACTCTAAAGAATGTGCAAAATGAGGAGGAAAACGAACTATGCGATCACGATTAC TCGCAGCCTTAATCTTTACG
Product: ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 397; Mature: 397
Protein sequence:
>397_residues MFHNFGPLYAFTLKSRIRSKAFLISTALTILFIFGFTNIDRIMSSFEDSEQASALVVSENTELVDTMKSLGYEDVASSEI TEEEARAGINDGEYGVVAFVDGYDARVISERPEQEFTTLLQTSLQQLRNAELIESSDVDPAVIAALSEPIQLDESYLGRG GENSDELLSSSALVYVMLMLLYISIITYGSMISTEVTTEKSSRVMELIISTTHPVTHMLAKVTAIGTLALIQIGIFLGFG YVSASGSELATTVIENAGNARAVIYLLVFFLLGYLLYASLFAVLGSLVSRVEESQQMVMPVIMLLVAAFLVAMFGLNNPD ATIVTILSFVPFFAPMLMFLRVMLVDVAVWEVALSIGLLIGTIGVTLWIGSKFYRGGVLFYGTNAIKQWRQILQNRQ
Sequences:
>Translated_397_residues MFHNFGPLYAFTLKSRIRSKAFLISTALTILFIFGFTNIDRIMSSFEDSEQASALVVSENTELVDTMKSLGYEDVASSEI TEEEARAGINDGEYGVVAFVDGYDARVISERPEQEFTTLLQTSLQQLRNAELIESSDVDPAVIAALSEPIQLDESYLGRG GENSDELLSSSALVYVMLMLLYISIITYGSMISTEVTTEKSSRVMELIISTTHPVTHMLAKVTAIGTLALIQIGIFLGFG YVSASGSELATTVIENAGNARAVIYLLVFFLLGYLLYASLFAVLGSLVSRVEESQQMVMPVIMLLVAAFLVAMFGLNNPD ATIVTILSFVPFFAPMLMFLRVMLVDVAVWEVALSIGLLIGTIGVTLWIGSKFYRGGVLFYGTNAIKQWRQILQNRQ >Mature_397_residues MFHNFGPLYAFTLKSRIRSKAFLISTALTILFIFGFTNIDRIMSSFEDSEQASALVVSENTELVDTMKSLGYEDVASSEI TEEEARAGINDGEYGVVAFVDGYDARVISERPEQEFTTLLQTSLQQLRNAELIESSDVDPAVIAALSEPIQLDESYLGRG GENSDELLSSSALVYVMLMLLYISIITYGSMISTEVTTEKSSRVMELIISTTHPVTHMLAKVTAIGTLALIQIGIFLGFG YVSASGSELATTVIENAGNARAVIYLLVFFLLGYLLYASLFAVLGSLVSRVEESQQMVMPVIMLLVAAFLVAMFGLNNPD ATIVTILSFVPFFAPMLMFLRVMLVDVAVWEVALSIGLLIGTIGVTLWIGSKFYRGGVLFYGTNAIKQWRQILQNRQ
Specific function: Unknown
COG id: COG1668
COG function: function code CP; ABC-type Na+ efflux pump, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJ1024 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43568; Mature: 43568
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFHNFGPLYAFTLKSRIRSKAFLISTALTILFIFGFTNIDRIMSSFEDSEQASALVVSEN CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHCCEEEEECC TELVDTMKSLGYEDVASSEITEEEARAGINDGEYGVVAFVDGYDARVISERPEQEFTTLL HHHHHHHHHCCCHHHHHHHCCHHHHHCCCCCCCEEEEEEECCCCCHHHCCCCHHHHHHHH QTSLQQLRNAELIESSDVDPAVIAALSEPIQLDESYLGRGGENSDELLSSSALVYVMLML HHHHHHHHCCHHHCCCCCCHHHHHHHHCCHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHH LYISIITYGSMISTEVTTEKSSRVMELIISTTHPVTHMLAKVTAIGTLALIQIGIFLGFG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YVSASGSELATTVIENAGNARAVIYLLVFFLLGYLLYASLFAVLGSLVSRVEESQQMVMP HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIMLLVAAFLVAMFGLNNPDATIVTILSFVPFFAPMLMFLRVMLVDVAVWEVALSIGLLI HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GTIGVTLWIGSKFYRGGVLFYGTNAIKQWRQILQNRQ HHHHHHHHHCCHHHCCCEEEECCHHHHHHHHHHCCCC >Mature Secondary Structure MFHNFGPLYAFTLKSRIRSKAFLISTALTILFIFGFTNIDRIMSSFEDSEQASALVVSEN CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHCCEEEEECC TELVDTMKSLGYEDVASSEITEEEARAGINDGEYGVVAFVDGYDARVISERPEQEFTTLL HHHHHHHHHCCCHHHHHHHCCHHHHHCCCCCCCEEEEEEECCCCCHHHCCCCHHHHHHHH QTSLQQLRNAELIESSDVDPAVIAALSEPIQLDESYLGRGGENSDELLSSSALVYVMLML HHHHHHHHCCHHHCCCCCCHHHHHHHHCCHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHH LYISIITYGSMISTEVTTEKSSRVMELIISTTHPVTHMLAKVTAIGTLALIQIGIFLGFG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YVSASGSELATTVIENAGNARAVIYLLVFFLLGYLLYASLFAVLGSLVSRVEESQQMVMP HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIMLLVAAFLVAMFGLNNPDATIVTILSFVPFFAPMLMFLRVMLVDVAVWEVALSIGLLI HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GTIGVTLWIGSKFYRGGVLFYGTNAIKQWRQILQNRQ HHHHHHHHHCCHHHCCCEEEECCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]