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The map label for this gene is ykfC [C]

Identifier: 229916566

GI number: 229916566

Start: 794892

End: 796280

Strand: Reverse

Name: ykfC [C]

Synonym: EAT1b_0837

Alternate gene names: 229916566

Gene position: 796280-794892 (Counterclockwise)

Preceding gene: 229916567

Following gene: 229916565

Centisome position: 26.54

GC content: 24.77

Gene sequence:

>1389_bases
TTGGCTTTAGCATTTAAATTATTTAATAAAAAGTTTACAAAAAAGTACATAGAATCTAAATATGATTTTTATATTAGTAA
TAATACTGCGAGTGGAATAGACAAACTTCAAAAGAAAAAGTTCGATTTAATTAAAAATGATCAAATCCAAGTTATTGTAA
ATAAAGTTAGAAGTGGAACATACAAGTTTACATTTTATAAGGAAAATTTGATAATTAAAAATAGAGATAGCTTACCTAGG
ATGATTTCAATACCTACCCTAAGGGATAGGATAGTTATGAAAGTATTGCATGAAATTTTGAGAGATACATTTAAAATAGA
ACTTAAACTAGTTCAATCGGTAATAAAGAAATTAACTGAAGAAAGTACAAAATATGATAGTTATATAAAAATTGACATTT
CTAATTTTTTTGGCACTCTAGATCAAGATTTACTAATGAAAAAAATAAAAAAAAGAGTTCGAAAAAAAGAAATTCTATGT
TTAATTGAAGACTCTATTAAGACACCTACAGTAAATTCTTACCATAGAAAAGAAAACGAAATAATAGGTAATTTTAAAGG
TGTTCCTCAAGGAATACCTATTTCTAATGTTTTAGCAGAAATTTATTTAAAAGATTTAGATTATTTATACTTACAGCGAC
AAGATTTAGCCTATTTTAGATATGTAGATGACATTTTGATACTTTGTAATAAGAGTGATGTATTCGATATCGAGTCCGAA
ATAAAAAAATATATTTTAGAAGAATATAATCTGAATATTAACTTTCAAAAGTCTACTTCTGGAAGTTTATATGATGGTAT
TAACTACTTGGGTTATACTTTTGAGAAAAGAAACGATAATTTATTTGTGTGTTCAGTAAAAAAAGAATCCTTAATTAAAA
TTGAAAATTCTTTAGCATCATTACTAGCAAGGTTTAAGAATTTAGAAGGCAAAATGAAGCCTTCTGAACTAATTTTCTAT
CTTAATTTAAAAATAACTGGAGCCTTTGTTAAGGACGGTAATGATTTATCTAAGGAAACTGAAATAAAAACTAAAAAATA
TGGATGGTTATTTTTTTATTCTCAGATTAATGATTTGAGAGTGTTATATCACCTTGATTATTTAGTCGACAAATTTATTG
ATAAGTATGACAAAAATGGTTTGATTGATAAATTATTAGTTAAAAAATTCGTGAAATCATACTATGAAATCACCCAGAAG
AGAAATAAAAGTCATTACATCTTTAATCCAAGTAGTTTTTCTATAGAAGATAAAAAGCAATTTCTAATTGATACCTTTGC
GATGAAAACTAAAGATTTAAAAACTGAAGCAAGTATCGATTATCACTTCAATATTCGTATTAAGAGAAAAATACTTGAAT
TAGAAGAAGATATACAGACATTTTCTTAA

Upstream 100 bases:

>100_bases
CTTAATTTTTTCCGCTCTACTATGGACTGTAATTTATTTAATTCCTATTGCTAGCGTTTTTTTCTTTAGCGTAAATTTGT
TGAAAGGGATGTGACTTTTA

Downstream 100 bases:

>100_bases
TATTTCTTTAAACATTTCTAGTGAATGTATTTATTTTATATGCTCTGTAAAGTTGAATAAACTTTCTATATATCCTTAGA
CTGATTTATCTTTTAAAAAA

Product: RNA-directed DNA polymerase (Reverse transcriptase)

Products: NA

Alternate protein names: Prophage; Reverse Transcriptase Family Protein; Retron-Type Reverse Transcriptase; Reverse Transcriptase Domain Protein; Reverse Transcriptase/Maturase; RNA-Directed DNA Polymerase Protein

Number of amino acids: Translated: 462; Mature: 461

Protein sequence:

>462_residues
MALAFKLFNKKFTKKYIESKYDFYISNNTASGIDKLQKKKFDLIKNDQIQVIVNKVRSGTYKFTFYKENLIIKNRDSLPR
MISIPTLRDRIVMKVLHEILRDTFKIELKLVQSVIKKLTEESTKYDSYIKIDISNFFGTLDQDLLMKKIKKRVRKKEILC
LIEDSIKTPTVNSYHRKENEIIGNFKGVPQGIPISNVLAEIYLKDLDYLYLQRQDLAYFRYVDDILILCNKSDVFDIESE
IKKYILEEYNLNINFQKSTSGSLYDGINYLGYTFEKRNDNLFVCSVKKESLIKIENSLASLLARFKNLEGKMKPSELIFY
LNLKITGAFVKDGNDLSKETEIKTKKYGWLFFYSQINDLRVLYHLDYLVDKFIDKYDKNGLIDKLLVKKFVKSYYEITQK
RNKSHYIFNPSSFSIEDKKQFLIDTFAMKTKDLKTEASIDYHFNIRIKRKILELEEDIQTFS

Sequences:

>Translated_462_residues
MALAFKLFNKKFTKKYIESKYDFYISNNTASGIDKLQKKKFDLIKNDQIQVIVNKVRSGTYKFTFYKENLIIKNRDSLPR
MISIPTLRDRIVMKVLHEILRDTFKIELKLVQSVIKKLTEESTKYDSYIKIDISNFFGTLDQDLLMKKIKKRVRKKEILC
LIEDSIKTPTVNSYHRKENEIIGNFKGVPQGIPISNVLAEIYLKDLDYLYLQRQDLAYFRYVDDILILCNKSDVFDIESE
IKKYILEEYNLNINFQKSTSGSLYDGINYLGYTFEKRNDNLFVCSVKKESLIKIENSLASLLARFKNLEGKMKPSELIFY
LNLKITGAFVKDGNDLSKETEIKTKKYGWLFFYSQINDLRVLYHLDYLVDKFIDKYDKNGLIDKLLVKKFVKSYYEITQK
RNKSHYIFNPSSFSIEDKKQFLIDTFAMKTKDLKTEASIDYHFNIRIKRKILELEEDIQTFS
>Mature_461_residues
ALAFKLFNKKFTKKYIESKYDFYISNNTASGIDKLQKKKFDLIKNDQIQVIVNKVRSGTYKFTFYKENLIIKNRDSLPRM
ISIPTLRDRIVMKVLHEILRDTFKIELKLVQSVIKKLTEESTKYDSYIKIDISNFFGTLDQDLLMKKIKKRVRKKEILCL
IEDSIKTPTVNSYHRKENEIIGNFKGVPQGIPISNVLAEIYLKDLDYLYLQRQDLAYFRYVDDILILCNKSDVFDIESEI
KKYILEEYNLNINFQKSTSGSLYDGINYLGYTFEKRNDNLFVCSVKKESLIKIENSLASLLARFKNLEGKMKPSELIFYL
NLKITGAFVKDGNDLSKETEIKTKKYGWLFFYSQINDLRVLYHLDYLVDKFIDKYDKNGLIDKLLVKKFVKSYYEITQKR
NKSHYIFNPSSFSIEDKKQFLIDTFAMKTKDLKTEASIDYHFNIRIKRKILELEEDIQTFS

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54710; Mature: 54579

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALAFKLFNKKFTKKYIESKYDFYISNNTASGIDKLQKKKFDLIKNDQIQVIVNKVRSGT
CEEEHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCE
YKFTFYKENLIIKNRDSLPRMISIPTLRDRIVMKVLHEILRDTFKIELKLVQSVIKKLTE
EEEEEEECCEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESTKYDSYIKIDISNFFGTLDQDLLMKKIKKRVRKKEILCLIEDSIKTPTVNSYHRKENE
CCCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHCHH
IIGNFKGVPQGIPISNVLAEIYLKDLDYLYLQRQDLAYFRYVDDILILCNKSDVFDIESE
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCCCCHHHH
IKKYILEEYNLNINFQKSTSGSLYDGINYLGYTFEKRNDNLFVCSVKKESLIKIENSLAS
HHHHHHHHHCCCEEEECCCCCCHHHCHHHHCEEEEECCCCEEEEEECCHHHHHHHHHHHH
LLARFKNLEGKMKPSELIFYLNLKITGAFVKDGNDLSKETEIKTKKYGWLFFYSQINDLR
HHHHHHCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCHHCCCEEEEEEEEEEECCCHHH
VLYHLDYLVDKFIDKYDKNGLIDKLLVKKFVKSYYEITQKRNKSHYIFNPSSFSIEDKKQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
FLIDTFAMKTKDLKTEASIDYHFNIRIKRKILELEEDIQTFS
HHHHHHHHHHHCCCCCCEEEEEEEEEEHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ALAFKLFNKKFTKKYIESKYDFYISNNTASGIDKLQKKKFDLIKNDQIQVIVNKVRSGT
EEEHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCE
YKFTFYKENLIIKNRDSLPRMISIPTLRDRIVMKVLHEILRDTFKIELKLVQSVIKKLTE
EEEEEEECCEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESTKYDSYIKIDISNFFGTLDQDLLMKKIKKRVRKKEILCLIEDSIKTPTVNSYHRKENE
CCCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHCHH
IIGNFKGVPQGIPISNVLAEIYLKDLDYLYLQRQDLAYFRYVDDILILCNKSDVFDIESE
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCCCCHHHH
IKKYILEEYNLNINFQKSTSGSLYDGINYLGYTFEKRNDNLFVCSVKKESLIKIENSLAS
HHHHHHHHHCCCEEEECCCCCCHHHCHHHHCEEEEECCCCEEEEEECCHHHHHHHHHHHH
LLARFKNLEGKMKPSELIFYLNLKITGAFVKDGNDLSKETEIKTKKYGWLFFYSQINDLR
HHHHHHCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCHHCCCEEEEEEEEEEECCCHHH
VLYHLDYLVDKFIDKYDKNGLIDKLLVKKFVKSYYEITQKRNKSHYIFNPSSFSIEDKKQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
FLIDTFAMKTKDLKTEASIDYHFNIRIKRKILELEEDIQTFS
HHHHHHHHHHHCCCCCCEEEEEEEEEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA