| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is ytfP [H]
Identifier: 229916460
GI number: 229916460
Start: 682291
End: 683556
Strand: Direct
Name: ytfP [H]
Synonym: EAT1b_0730
Alternate gene names: 229916460
Gene position: 682291-683556 (Clockwise)
Preceding gene: 229916457
Following gene: 229916467
Centisome position: 22.74
GC content: 51.34
Gene sequence:
>1266_bases ATGAAAGATGTCATCGTCATCGGTGGAGGGCCGAGCGGACTCATGGCAACGTATGCTGCGGCAAAAAGTGGCGCATCGAC CTTGCTGATTGATAAAGGCTCGAAACTCGGTCGAAAATTAGCCATTTCAGGTGGAGGACGTTGTAACGTCACGAACCGAA AACCAATTGATGAATTGATTCAATTCATCCCCGGGAACGGTCGCTTTTTATACAGCGCCCTCGCCCAGTTCGACAACCAA TCCATCATCGACCTGTTCACAGGATTCGGCATCCCGCTGAAAGAAGAGGACAACGGGCGCATGTTTCCTGTGACCGATAA GGCACAAGACGTGGTCAACACATTGCTTCGTGCGATTGAAGACCTCGGTGTCGAGATTCGAAAAAAAGCAGAAGTCAAAA CGCTACATTTTAATGAAGAAAACGAGTTTCACGCGGTCGAGCTGATGGACGGAGAAATGATTGAAGCGAAAGCTTGCGTC GTCGCGGTCGGCGGTCAGTCTGTCCCACACACCGGTTCGACCGGGGACGGCTATCCATGGGCAGAGAAGGCAGGACATAC CATCACGGAACTCTTCCCGACAGAAGTACCGATCAAGTTGAACGATTCGTTCATCGGAACAAAACAACTTCAAGGACTAT CGTTACGTGACGTCGCGTTGACGGTACACGGCAAAAAAGGAAAAGCGATCAAGACGCACCAAGGCGACATGATCTTTACC CATTTCGGGATCTCGGGTCCAATCGCGCTCCGTTGCAGTCAATATACGATCAAAGAACGGAAGCGCAGCAAAGAACAGGT CGTCCTCATGTCACTCGACTTCTTCCCGGACACGTCACGAGATGCGCTCGTCCAGGAACTGTGGAACCAAGTACAGAGCC AACCGAAGCGTGCCGTTAAAAACGTATGGAAAGGCTACATCCCCGAGCGACTTCTTGACTTATTGCTCGAAGAACTCGCA TTTGGAGAAGAAGACGCGAGTCAGTTGAAAAAGCAATCCGTCATCGACTTCGCATCGCGTCTAAAAATGTTCGAGATGCA CGCCGTCGGGACACTCGACTTTGACAAAGCGTTCGTCACAGGTGGCGGCGTTTCGGTTAAAGAAGTTGCGCCACAGACGA TGATGTCAAAGAAAGCACCAGGCCTTTTCTTTGCCGGTGAAGTGCTCGACATTCATGGATACACAGGTGGCTACAATATC ACGGCCGCCTTCACAACGGGACATTGTGCCGGATCGCACGCAGCTGAACTGGCGACAGAGCGGTAA
Upstream 100 bases:
>100_bases TTTACAAAACAACCGCTTCTCATTATACTCTTACTGTTACGGATAATAAAGTTACGATAATTTTACTAATCATATAGATG AAGAAATGAGGAGATTACCT
Downstream 100 bases:
>100_bases AAGGTTCGATCTTACGTATCGGCTACGTACTATTATGTTCACTAACAATCAAAAGGCTTGATCCTGTATCATTCAGGACC AAGCCTTTTTTACATTCTTT
Product: HI0933 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 421; Mature: 421
Protein sequence:
>421_residues MKDVIVIGGGPSGLMATYAAAKSGASTLLIDKGSKLGRKLAISGGGRCNVTNRKPIDELIQFIPGNGRFLYSALAQFDNQ SIIDLFTGFGIPLKEEDNGRMFPVTDKAQDVVNTLLRAIEDLGVEIRKKAEVKTLHFNEENEFHAVELMDGEMIEAKACV VAVGGQSVPHTGSTGDGYPWAEKAGHTITELFPTEVPIKLNDSFIGTKQLQGLSLRDVALTVHGKKGKAIKTHQGDMIFT HFGISGPIALRCSQYTIKERKRSKEQVVLMSLDFFPDTSRDALVQELWNQVQSQPKRAVKNVWKGYIPERLLDLLLEELA FGEEDASQLKKQSVIDFASRLKMFEMHAVGTLDFDKAFVTGGGVSVKEVAPQTMMSKKAPGLFFAGEVLDIHGYTGGYNI TAAFTTGHCAGSHAAELATER
Sequences:
>Translated_421_residues MKDVIVIGGGPSGLMATYAAAKSGASTLLIDKGSKLGRKLAISGGGRCNVTNRKPIDELIQFIPGNGRFLYSALAQFDNQ SIIDLFTGFGIPLKEEDNGRMFPVTDKAQDVVNTLLRAIEDLGVEIRKKAEVKTLHFNEENEFHAVELMDGEMIEAKACV VAVGGQSVPHTGSTGDGYPWAEKAGHTITELFPTEVPIKLNDSFIGTKQLQGLSLRDVALTVHGKKGKAIKTHQGDMIFT HFGISGPIALRCSQYTIKERKRSKEQVVLMSLDFFPDTSRDALVQELWNQVQSQPKRAVKNVWKGYIPERLLDLLLEELA FGEEDASQLKKQSVIDFASRLKMFEMHAVGTLDFDKAFVTGGGVSVKEVAPQTMMSKKAPGLFFAGEVLDIHGYTGGYNI TAAFTTGHCAGSHAAELATER >Mature_421_residues MKDVIVIGGGPSGLMATYAAAKSGASTLLIDKGSKLGRKLAISGGGRCNVTNRKPIDELIQFIPGNGRFLYSALAQFDNQ SIIDLFTGFGIPLKEEDNGRMFPVTDKAQDVVNTLLRAIEDLGVEIRKKAEVKTLHFNEENEFHAVELMDGEMIEAKACV VAVGGQSVPHTGSTGDGYPWAEKAGHTITELFPTEVPIKLNDSFIGTKQLQGLSLRDVALTVHGKKGKAIKTHQGDMIFT HFGISGPIALRCSQYTIKERKRSKEQVVLMSLDFFPDTSRDALVQELWNQVQSQPKRAVKNVWKGYIPERLLDLLLEELA FGEEDASQLKKQSVIDFASRLKMFEMHAVGTLDFDKAFVTGGGVSVKEVAPQTMMSKKAPGLFFAGEVLDIHGYTGGYNI TAAFTTGHCAGSHAAELATER
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI2367234, Length=401, Percent_Identity=31.1720698254364, Blast_Score=174, Evalue=9e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 45836; Mature: 45836
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDVIVIGGGPSGLMATYAAAKSGASTLLIDKGSKLGRKLAISGGGRCNVTNRKPIDELI CCCEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCEEEECCCCEEECCCCCCHHHHH QFIPGNGRFLYSALAQFDNQSIIDLFTGFGIPLKEEDNGRMFPVTDKAQDVVNTLLRAIE HHCCCCCHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHH DLGVEIRKKAEVKTLHFNEENEFHAVELMDGEMIEAKACVVAVGGQSVPHTGSTGDGYPW HCCHHHCCCCCEEEEEECCCCCEEEEEECCCCEEECEEEEEEECCCCCCCCCCCCCCCCC AEKAGHTITELFPTEVPIKLNDSFIGTKQLQGLSLRDVALTVHGKKGKAIKTHQGDMIFT HHHCCCEEHHHCCCCCCEEECCCCCCHHHCCCCEEEEEEEEEECCCCCEEEECCCCEEEE HFGISGPIALRCSQYTIKERKRSKEQVVLMSLDFFPDTSRDALVQELWNQVQSQPKRAVK EECCCCCEEEEECHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH NVWKGYIPERLLDLLLEELAFGEEDASQLKKQSVIDFASRLKMFEMHAVGTLDFDKAFVT HHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEE GGGVSVKEVAPQTMMSKKAPGLFFAGEVLDIHGYTGGYNITAAFTTGHCAGSHAAELATE CCCCCHHHHCHHHHHHCCCCCEEEECEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHCC R C >Mature Secondary Structure MKDVIVIGGGPSGLMATYAAAKSGASTLLIDKGSKLGRKLAISGGGRCNVTNRKPIDELI CCCEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCEEEECCCCEEECCCCCCHHHHH QFIPGNGRFLYSALAQFDNQSIIDLFTGFGIPLKEEDNGRMFPVTDKAQDVVNTLLRAIE HHCCCCCHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHH DLGVEIRKKAEVKTLHFNEENEFHAVELMDGEMIEAKACVVAVGGQSVPHTGSTGDGYPW HCCHHHCCCCCEEEEEECCCCCEEEEEECCCCEEECEEEEEEECCCCCCCCCCCCCCCCC AEKAGHTITELFPTEVPIKLNDSFIGTKQLQGLSLRDVALTVHGKKGKAIKTHQGDMIFT HHHCCCEEHHHCCCCCCEEECCCCCCHHHCCCCEEEEEEEEEECCCCCEEEECCCCEEEE HFGISGPIALRCSQYTIKERKRSKEQVVLMSLDFFPDTSRDALVQELWNQVQSQPKRAVK EECCCCCEEEEECHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH NVWKGYIPERLLDLLLEELAFGEEDASQLKKQSVIDFASRLKMFEMHAVGTLDFDKAFVT HHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEE GGGVSVKEVAPQTMMSKKAPGLFFAGEVLDIHGYTGGYNITAAFTTGHCAGSHAAELATE CCCCCHHHHCHHHHHHCCCCCEEEECEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHCC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]