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The map label for this gene is ytlP [H]

Identifier: 229916453

GI number: 229916453

Start: 675231

End: 675806

Strand: Reverse

Name: ytlP [H]

Synonym: EAT1b_0723

Alternate gene names: 229916453

Gene position: 675806-675231 (Counterclockwise)

Preceding gene: 229916454

Following gene: 229916452

Centisome position: 22.53

GC content: 48.09

Gene sequence:

>576_bases
ATGAGTACGCATTACTTTATCGCGATTCCCATTGAATCAACGGAACTGGTTGACGTACAGCAAACCATCTTACCTTATTA
CTCCTATCGCCGAATCTATCGGCCTGAAGAGTTTCATATGACGATACAATTTTTAGGAAGCGTGGACGAGGATGAATTAG
ACGAAGTAAAAGAAATTACGCGTAGAATCTGTGAGGAGACTCTGCCGTTCACGTTGGAGTTTCGAGCCATCGACCATTTC
GGGCGACCAGATCGGCCCCGCGTTCTAACCATCGTTCCGGATGCCTCCGAGCCCCTTCAACGGTTGGCGCATTCCCTCCG
CCATGAACTAGTTGATGTGATTCCAAGATTGGACCGGAAGTCGTTTGTCCCTCACGTGACACTCGCTAAAAAATGGGGCG
AAGGGGAGCGTGTCCCATACGTCCCCCCTGAATTTCACGCGACGGAATCAGTAGAAGAATTAATTTTATATGAAGTACAG
CCGACTCATACACCTGCCTATCGAGCAGTAGACGTATTTCCGCTAAGACGGCCAGAGGAGGATATATGGCAATCCCGGTT
AAAATTTTTGACGTAA

Upstream 100 bases:

>100_bases
ACGATATTTTAGGAGTGTTTTGGATGTATACCATTGTCACAGCAATTGGAGCATTGATTTGGATTGGAATGTCACGTCGC
ACGTTGAAAGGATGAATGAG

Downstream 100 bases:

>100_bases
TCTCAAAATATGAACGTGATGTATTAGATCAATATAATCGTTATTTGGAGTATGTGGAATCCGATACGGCACGCCTACAG
CGCCTTCATGAAAACAATCG

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSTHYFIAIPIESTELVDVQQTILPYYSYRRIYRPEEFHMTIQFLGSVDEDELDEVKEITRRICEETLPFTLEFRAIDHF
GRPDRPRVLTIVPDASEPLQRLAHSLRHELVDVIPRLDRKSFVPHVTLAKKWGEGERVPYVPPEFHATESVEELILYEVQ
PTHTPAYRAVDVFPLRRPEEDIWQSRLKFLT

Sequences:

>Translated_191_residues
MSTHYFIAIPIESTELVDVQQTILPYYSYRRIYRPEEFHMTIQFLGSVDEDELDEVKEITRRICEETLPFTLEFRAIDHF
GRPDRPRVLTIVPDASEPLQRLAHSLRHELVDVIPRLDRKSFVPHVTLAKKWGEGERVPYVPPEFHATESVEELILYEVQ
PTHTPAYRAVDVFPLRRPEEDIWQSRLKFLT
>Mature_190_residues
STHYFIAIPIESTELVDVQQTILPYYSYRRIYRPEEFHMTIQFLGSVDEDELDEVKEITRRICEETLPFTLEFRAIDHFG
RPDRPRVLTIVPDASEPLQRLAHSLRHELVDVIPRLDRKSFVPHVTLAKKWGEGERVPYVPPEFHATESVEELILYEVQP
THTPAYRAVDVFPLRRPEEDIWQSRLKFLT

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 22598; Mature: 22467

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTHYFIAIPIESTELVDVQQTILPYYSYRRIYRPEEFHMTIQFLGSVDEDELDEVKEIT
CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
RRICEETLPFTLEFRAIDHFGRPDRPRVLTIVPDASEPLQRLAHSLRHELVDVIPRLDRK
HHHHHHHCCEEEEEEEHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCH
SFVPHVTLAKKWGEGERVPYVPPEFHATESVEELILYEVQPTHTPAYRAVDVFPLRRPEE
HCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHEEECCCCCCCCHHEEEEEECCCCHH
DIWQSRLKFLT
HHHHHHHHHCC
>Mature Secondary Structure 
STHYFIAIPIESTELVDVQQTILPYYSYRRIYRPEEFHMTIQFLGSVDEDELDEVKEIT
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
RRICEETLPFTLEFRAIDHFGRPDRPRVLTIVPDASEPLQRLAHSLRHELVDVIPRLDRK
HHHHHHHCCEEEEEEEHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCH
SFVPHVTLAKKWGEGERVPYVPPEFHATESVEELILYEVQPTHTPAYRAVDVFPLRRPEE
HCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHEEECCCCCCCCHHEEEEEECCCCHH
DIWQSRLKFLT
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]