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The map label for this gene is ysdC [H]

Identifier: 229916373

GI number: 229916373

Start: 597188

End: 598267

Strand: Reverse

Name: ysdC [H]

Synonym: EAT1b_0643

Alternate gene names: 229916373

Gene position: 598267-597188 (Counterclockwise)

Preceding gene: 229916374

Following gene: 229916372

Centisome position: 19.94

GC content: 52.5

Gene sequence:

>1080_bases
ATGAATGAATCGTTACATATGTTAAAACGTTTGACGGATGCAACAGGCGTCCCGGGCAATGAGGGAGAAGTCCGTCAATT
GATGCGTGAATACCTCGAGCCGCATGTCGAGTCGTTTGAACAGGATGGACTCGGAAGTCTATTTGGTCAAGTGACCGGAG
ATGCTGAAGGTCCGCGTGTCATGATTGCGGGTCACATGGATGAAGTCGGCTTCATGGTGACGCGTGTGGAAGAAGGCGGT
TTCCTTCGTTTCCAGGCGCTCGGTGGCTGGTGGAACCAGGTGCTGTTGGCACAACGAATGGATGTAGTCACACGGTCTGG
TGAAAAGATTCCGGGTGTCATTGGTGCGAAACCACCTCACGTCCTACCGCTTGAGGCACGGAAGAAGCCCGTCGAAATCA
AAGATATGTTCTTAGATATCGGTGCGACGTCGAAAGACGAAGTGGCTGAGTGGGGAATTCGTCCAGGCGATACGGTCGTG
CCACATTGTGAATTCACAGTCATGAAAAATGAGAACTTCTTGATGGCGAAGGCATGGGACAACCGCATCGGATGTGCGAT
TGCCATCGAAGCAGCAAAACGTCTGAAGGAAGAATCGTTCCCTGGCGTCGTGTATACAGGAGCGACGGTACAGGAAGAGG
TCGGGTTACGTGGAGCGGTGACCGCTGCCAACTTGATTCGCCCGGATGTCGCGATTGCTGTCGATACAGGCATTCCGAGT
GATACGCCGGGGATGACCCAAGCAGAAGGGTTGTCAAAACTCGGGGACGGGGTTCAAGTCATCTTCTTTGATGCGACTAC
CGTCACAAACCCACGCCTTGTCGACCTCATCGTTGACGTGGCCAAAGAGCAAGACATCAAATATCAATTGGACTTAACGC
CAGGCGGTGGCACAGATGCTGGGCGATTCCATCTTTCTGGGATCGGGATGCCGGCCATCGCATTGACAGTGCCGGTCCGC
TATTTACACACGAACGTGTCCATCATCCATAAGGATGATTACGAGGCAGCGGTACAACTCGTTGTCGCATTGACGAAACG
TTTAGACCACGAAACGGTCCAATGGTTGAAAGAGGGATAA

Upstream 100 bases:

>100_bases
GGTTTTAATGAGCAACTCATTTTGCTAGCATACATGAATAAAAATGAAGTAAACCATGAGCGACAAAATCAAGGATATTA
ATGAAAAGGAGCGGATTGGT

Downstream 100 bases:

>100_bases
TATGACGAAGATTACGTCTACGAAGAGCGAGACGATTAAACGATTAAAACGATTGATGACGAAAAAAGGTCGTCAAGAAA
CGGGTCAATTCCTAGTAGAA

Product: Glutamyl aminopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MNESLHMLKRLTDATGVPGNEGEVRQLMREYLEPHVESFEQDGLGSLFGQVTGDAEGPRVMIAGHMDEVGFMVTRVEEGG
FLRFQALGGWWNQVLLAQRMDVVTRSGEKIPGVIGAKPPHVLPLEARKKPVEIKDMFLDIGATSKDEVAEWGIRPGDTVV
PHCEFTVMKNENFLMAKAWDNRIGCAIAIEAAKRLKEESFPGVVYTGATVQEEVGLRGAVTAANLIRPDVAIAVDTGIPS
DTPGMTQAEGLSKLGDGVQVIFFDATTVTNPRLVDLIVDVAKEQDIKYQLDLTPGGGTDAGRFHLSGIGMPAIALTVPVR
YLHTNVSIIHKDDYEAAVQLVVALTKRLDHETVQWLKEG

Sequences:

>Translated_359_residues
MNESLHMLKRLTDATGVPGNEGEVRQLMREYLEPHVESFEQDGLGSLFGQVTGDAEGPRVMIAGHMDEVGFMVTRVEEGG
FLRFQALGGWWNQVLLAQRMDVVTRSGEKIPGVIGAKPPHVLPLEARKKPVEIKDMFLDIGATSKDEVAEWGIRPGDTVV
PHCEFTVMKNENFLMAKAWDNRIGCAIAIEAAKRLKEESFPGVVYTGATVQEEVGLRGAVTAANLIRPDVAIAVDTGIPS
DTPGMTQAEGLSKLGDGVQVIFFDATTVTNPRLVDLIVDVAKEQDIKYQLDLTPGGGTDAGRFHLSGIGMPAIALTVPVR
YLHTNVSIIHKDDYEAAVQLVVALTKRLDHETVQWLKEG
>Mature_359_residues
MNESLHMLKRLTDATGVPGNEGEVRQLMREYLEPHVESFEQDGLGSLFGQVTGDAEGPRVMIAGHMDEVGFMVTRVEEGG
FLRFQALGGWWNQVLLAQRMDVVTRSGEKIPGVIGAKPPHVLPLEARKKPVEIKDMFLDIGATSKDEVAEWGIRPGDTVV
PHCEFTVMKNENFLMAKAWDNRIGCAIAIEAAKRLKEESFPGVVYTGATVQEEVGLRGAVTAANLIRPDVAIAVDTGIPS
DTPGMTQAEGLSKLGDGVQVIFFDATTVTNPRLVDLIVDVAKEQDIKYQLDLTPGGGTDAGRFHLSGIGMPAIALTVPVR
YLHTNVSIIHKDDYEAAVQLVVALTKRLDHETVQWLKEG

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=355, Percent_Identity=40.5633802816901, Blast_Score=277, Evalue=7e-76,
Organism=Escherichia coli, GI1788727, Length=354, Percent_Identity=34.180790960452, Blast_Score=191, Evalue=8e-50,
Organism=Escherichia coli, GI87082417, Length=347, Percent_Identity=30.5475504322767, Blast_Score=159, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 39104; Mature: 39104

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNESLHMLKRLTDATGVPGNEGEVRQLMREYLEPHVESFEQDGLGSLFGQVTGDAEGPRV
CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEE
MIAGHMDEVGFMVTRVEEGGFLRFQALGGWWNQVLLAQRMDVVTRSGEKIPGVIGAKPPH
EEEECCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
VLPLEARKKPVEIKDMFLDIGATSKDEVAEWGIRPGDTVVPHCEFTVMKNENFLMAKAWD
EEEHHCCCCCCCHHHEEEECCCCCHHHHHHCCCCCCCEECCCEEEEEEECCCEEEEEECC
NRIGCAIAIEAAKRLKEESFPGVVYTGATVQEEVGLRGAVTAANLIRPDVAIAVDTGIPS
CCCCEEEEHHHHHHHHHHCCCCEEEECCCHHHHCCCCHHHHHHHHCCCCEEEEEECCCCC
DTPGMTQAEGLSKLGDGVQVIFFDATTVTNPRLVDLIVDVAKEQDIKYQLDLTPGGGTDA
CCCCCCHHHHHHHHCCCEEEEEEECEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCC
GRFHLSGIGMPAIALTVPVRYLHTNVSIIHKDDYEAAVQLVVALTKRLDHETVQWLKEG
CEEEEECCCCCHHHHHHHHHEEECCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MNESLHMLKRLTDATGVPGNEGEVRQLMREYLEPHVESFEQDGLGSLFGQVTGDAEGPRV
CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEE
MIAGHMDEVGFMVTRVEEGGFLRFQALGGWWNQVLLAQRMDVVTRSGEKIPGVIGAKPPH
EEEECCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
VLPLEARKKPVEIKDMFLDIGATSKDEVAEWGIRPGDTVVPHCEFTVMKNENFLMAKAWD
EEEHHCCCCCCCHHHEEEECCCCCHHHHHHCCCCCCCEECCCEEEEEEECCCEEEEEECC
NRIGCAIAIEAAKRLKEESFPGVVYTGATVQEEVGLRGAVTAANLIRPDVAIAVDTGIPS
CCCCEEEEHHHHHHHHHHCCCCEEEECCCHHHHCCCCHHHHHHHHCCCCEEEEEECCCCC
DTPGMTQAEGLSKLGDGVQVIFFDATTVTNPRLVDLIVDVAKEQDIKYQLDLTPGGGTDA
CCCCCCHHHHHHHHCCCEEEEEEECEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCC
GRFHLSGIGMPAIALTVPVRYLHTNVSIIHKDDYEAAVQLVVALTKRLDHETVQWLKEG
CEEEEECCCCCHHHHHHHHHEEECCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]