| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is ykoD [H]
Identifier: 229916066
GI number: 229916066
Start: 300554
End: 301897
Strand: Reverse
Name: ykoD [H]
Synonym: EAT1b_0334
Alternate gene names: 229916066
Gene position: 301897-300554 (Counterclockwise)
Preceding gene: 229916067
Following gene: 229916065
Centisome position: 10.06
GC content: 51.34
Gene sequence:
>1344_bases ATGGTTGAGACAGAATCGCTTTCATTCCGATTCCCAGAAAGTCTGGACACCATCTTAAAAGATGTGTCACTATCCATAAA ACCTGGACGCACGATTTTGACAGGGGCGAGCGGAAGCGGGAAGTCGACCCTGCTCGCGCTGTTCAACCGTCTCTATCCAG AGAATTGTGATGGGATCCTGGAAGGCAGACTCGAACTACTGGGACGCTCACACGACGACTACGCACCAGGCGAGATCAAT CAGCGGGTCGGGACGGTATTCCAAGACCCGGACACGCAGTTCGTGATGGAACGGGTGGAAGAGGAACTCGTCTTCACACT CGAAAATTTGCAGACGCCGGTCGAGGTCATCGATCAGCGCGTGACGGAGATTCTCGAGTCACTCCAACTGACCGAATACC GAAATCGTCACATCGATTCCTTGTCAGGAGGGGAGAAACAGCGGATCGCCGTCGCTTGCGCCATGGTCGGACAACCGGAA TGGTTGCTTCTCGATGAGCCGTTGACACACCTTGACCCAGTGACCGCGAATCGATTCGTCGACTGGCTCGATCACTTGGA CAACGTGAACGTCATCGTTGTCGAACATCGCGCGCACTTGTGGGGAGACTTTTTTGATTGGCACATCGAACTCGATCAAG GACGGATTGTAAGGAACGAGCCGTTTCAACCGGTCGATGATTTTTCATTCACACGATCGTCATTACCACGACAAGCAGTC GAACACTATGTGGTCGACGAGGTGGAGCGTGACACATTTCGATTAAAAGGAGTGACCCTAACAGCTCGTATCGGGGAAGT GATTGCCATATTGGGACCAAATGGGAGTGGAAAGTCGACGTTTTTACGAAGTTTGACGGAGTCTGACCGCCGGGTCGGAC TCGTCCCTCAATCTCCAGAACACTTATTTTTCATGAACTCGGTCGAGCAAGAGCTACAGTTTGGTCATGAGGAATCGATT GATAACGTACTAGAGGAGCTATCCCTCGAGGATAAACGAGTGTTCCATCCATTGTCACTCAGTCATGGACAGAAGCGACG ACTCGCCGTCGGGATTCAGTTACTATCTAACAAACAGTTGCTTGCCTTCGATGAACCGACGGCTGGCCAAGATGAACCGT CACTCCATGCACTAGAGATTTTAATGAAGCGACATGCGGAAAAGGGACAGACGATCTTGTTCGTGACCCATGACTTATCG TTCGCCAATATCGCCCATACGTTCTATTTGATGAAGGACGGGGAACTCTCAGGACCATTCGGAGATGAGCTCTGGCAGGA CACGGAGAGACTTCGTCATTATCGACTCACGGGAGGTCGAAAGCGATGTCACTCCATGATATGA
Upstream 100 bases:
>100_bases GGCATGGTCATCGCAGGAATCGGTGGGAAGTTGCTCAGTGACCTGTTGCTCAAGACGGGGTCGCTTCGTGGCTATGCGAT CGCTCGGAGTGGGAACGTCC
Downstream 100 bases:
>100_bases ATCCGACGATCAAGTTTGTGACGATGACGATCATCATGTTCGGGCTTGCCTTGCTCTATAACCCGTGGACCCCGCTCGTC ATCATCGTCGGTACGTTGAC
Product: ABC transporter
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 447; Mature: 447
Protein sequence:
>447_residues MVETESLSFRFPESLDTILKDVSLSIKPGRTILTGASGSGKSTLLALFNRLYPENCDGILEGRLELLGRSHDDYAPGEIN QRVGTVFQDPDTQFVMERVEEELVFTLENLQTPVEVIDQRVTEILESLQLTEYRNRHIDSLSGGEKQRIAVACAMVGQPE WLLLDEPLTHLDPVTANRFVDWLDHLDNVNVIVVEHRAHLWGDFFDWHIELDQGRIVRNEPFQPVDDFSFTRSSLPRQAV EHYVVDEVERDTFRLKGVTLTARIGEVIAILGPNGSGKSTFLRSLTESDRRVGLVPQSPEHLFFMNSVEQELQFGHEESI DNVLEELSLEDKRVFHPLSLSHGQKRRLAVGIQLLSNKQLLAFDEPTAGQDEPSLHALEILMKRHAEKGQTILFVTHDLS FANIAHTFYLMKDGELSGPFGDELWQDTERLRHYRLTGGRKRCHSMI
Sequences:
>Translated_447_residues MVETESLSFRFPESLDTILKDVSLSIKPGRTILTGASGSGKSTLLALFNRLYPENCDGILEGRLELLGRSHDDYAPGEIN QRVGTVFQDPDTQFVMERVEEELVFTLENLQTPVEVIDQRVTEILESLQLTEYRNRHIDSLSGGEKQRIAVACAMVGQPE WLLLDEPLTHLDPVTANRFVDWLDHLDNVNVIVVEHRAHLWGDFFDWHIELDQGRIVRNEPFQPVDDFSFTRSSLPRQAV EHYVVDEVERDTFRLKGVTLTARIGEVIAILGPNGSGKSTFLRSLTESDRRVGLVPQSPEHLFFMNSVEQELQFGHEESI DNVLEELSLEDKRVFHPLSLSHGQKRRLAVGIQLLSNKQLLAFDEPTAGQDEPSLHALEILMKRHAEKGQTILFVTHDLS FANIAHTFYLMKDGELSGPFGDELWQDTERLRHYRLTGGRKRCHSMI >Mature_447_residues MVETESLSFRFPESLDTILKDVSLSIKPGRTILTGASGSGKSTLLALFNRLYPENCDGILEGRLELLGRSHDDYAPGEIN QRVGTVFQDPDTQFVMERVEEELVFTLENLQTPVEVIDQRVTEILESLQLTEYRNRHIDSLSGGEKQRIAVACAMVGQPE WLLLDEPLTHLDPVTANRFVDWLDHLDNVNVIVVEHRAHLWGDFFDWHIELDQGRIVRNEPFQPVDDFSFTRSSLPRQAV EHYVVDEVERDTFRLKGVTLTARIGEVIAILGPNGSGKSTFLRSLTESDRRVGLVPQSPEHLFFMNSVEQELQFGHEESI DNVLEELSLEDKRVFHPLSLSHGQKRRLAVGIQLLSNKQLLAFDEPTAGQDEPSLHALEILMKRHAEKGQTILFVTHDLS FANIAHTFYLMKDGELSGPFGDELWQDTERLRHYRLTGGRKRCHSMI
Specific function: Part of the ABC transporter complex YkoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Responsible for energy coupling to the transport system (Probable) [H]
COG id: COG1122
COG function: function code P; ABC-type cobalt transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI171184400, Length=226, Percent_Identity=31.4159292035398, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI255708477, Length=231, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI116734710, Length=199, Percent_Identity=27.6381909547739, Blast_Score=70, Evalue=6e-12, Organism=Homo sapiens, GI27477115, Length=219, Percent_Identity=27.3972602739726, Blast_Score=70, Evalue=6e-12, Organism=Homo sapiens, GI153792144, Length=183, Percent_Identity=30.0546448087432, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI27262624, Length=166, Percent_Identity=31.3253012048193, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI27262626, Length=166, Percent_Identity=31.3253012048193, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI47078218, Length=215, Percent_Identity=27.4418604651163, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI45446740, Length=181, Percent_Identity=28.1767955801105, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI90421313, Length=252, Percent_Identity=26.984126984127, Blast_Score=67, Evalue=4e-11, Organism=Homo sapiens, GI9665248, Length=180, Percent_Identity=29.4444444444444, Blast_Score=66, Evalue=6e-11, Organism=Escherichia coli, GI1788506, Length=508, Percent_Identity=24.2125984251968, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI48994943, Length=483, Percent_Identity=25.4658385093168, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1788225, Length=211, Percent_Identity=30.8056872037915, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1790467, Length=221, Percent_Identity=32.1266968325792, Blast_Score=86, Evalue=5e-18, Organism=Escherichia coli, GI1786398, Length=298, Percent_Identity=25.8389261744966, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1786872, Length=196, Percent_Identity=30.6122448979592, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI87081834, Length=230, Percent_Identity=32.1739130434783, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI48994883, Length=252, Percent_Identity=28.1746031746032, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1789672, Length=223, Percent_Identity=27.3542600896861, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI1787089, Length=210, Percent_Identity=30.4761904761905, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI1787029, Length=246, Percent_Identity=28.4552845528455, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1790162, Length=240, Percent_Identity=31.6666666666667, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1787370, Length=156, Percent_Identity=38.4615384615385, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI87081709, Length=173, Percent_Identity=32.9479768786127, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1788761, Length=174, Percent_Identity=34.4827586206897, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI1788450, Length=248, Percent_Identity=29.0322580645161, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1787105, Length=198, Percent_Identity=28.7878787878788, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87081791, Length=176, Percent_Identity=33.5227272727273, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787041, Length=493, Percent_Identity=23.5294117647059, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI1786703, Length=195, Percent_Identity=34.3589743589744, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI1790544, Length=248, Percent_Identity=27.4193548387097, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1786319, Length=194, Percent_Identity=30.4123711340206, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1787759, Length=215, Percent_Identity=27.906976744186, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1786654, Length=214, Percent_Identity=29.4392523364486, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1787772, Length=209, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=5e-12, Organism=Escherichia coli, GI1789864, Length=240, Percent_Identity=27.0833333333333, Blast_Score=66, Evalue=5e-12, Organism=Escherichia coli, GI1789032, Length=170, Percent_Identity=31.1764705882353, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1789873, Length=181, Percent_Identity=29.2817679558011, Blast_Score=65, Evalue=8e-12, Organism=Escherichia coli, GI1787712, Length=152, Percent_Identity=34.8684210526316, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1786563, Length=167, Percent_Identity=31.1377245508982, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787182, Length=227, Percent_Identity=29.9559471365639, Blast_Score=63, Evalue=4e-11, Organism=Escherichia coli, GI1787547, Length=212, Percent_Identity=27.8301886792453, Blast_Score=62, Evalue=8e-11, Organism=Escherichia coli, GI1786803, Length=213, Percent_Identity=27.2300469483568, Blast_Score=62, Evalue=9e-11, Organism=Escherichia coli, GI1789593, Length=190, Percent_Identity=23.6842105263158, Blast_Score=62, Evalue=1e-10, Organism=Caenorhabditis elegans, GI71992290, Length=213, Percent_Identity=30.5164319248826, Blast_Score=81, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17558664, Length=213, Percent_Identity=30.0469483568075, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI193208177, Length=212, Percent_Identity=28.3018867924528, Blast_Score=75, Evalue=9e-14, Organism=Caenorhabditis elegans, GI212646699, Length=207, Percent_Identity=29.4685990338164, Blast_Score=72, Evalue=6e-13, Organism=Caenorhabditis elegans, GI115534520, Length=227, Percent_Identity=27.7533039647577, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI25146777, Length=201, Percent_Identity=24.8756218905473, Blast_Score=69, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17565938, Length=204, Percent_Identity=29.9019607843137, Blast_Score=68, Evalue=8e-12, Organism=Caenorhabditis elegans, GI115533592, Length=199, Percent_Identity=29.1457286432161, Blast_Score=68, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193211017, Length=200, Percent_Identity=27.5, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193211015, Length=200, Percent_Identity=27.5, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71996809, Length=200, Percent_Identity=27.5, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17542146, Length=190, Percent_Identity=28.4210526315789, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17565586, Length=163, Percent_Identity=30.6748466257669, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17532409, Length=225, Percent_Identity=27.5555555555556, Blast_Score=65, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6319856, Length=227, Percent_Identity=29.9559471365639, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323959, Length=217, Percent_Identity=29.4930875576037, Blast_Score=66, Evalue=1e-11, Organism=Drosophila melanogaster, GI24641565, Length=233, Percent_Identity=30.9012875536481, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI23397593, Length=211, Percent_Identity=29.3838862559242, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24661270, Length=344, Percent_Identity=25.8720930232558, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI21355589, Length=344, Percent_Identity=25.8720930232558, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24581191, Length=193, Percent_Identity=28.4974093264249, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24581189, Length=193, Percent_Identity=28.4974093264249, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24581193, Length=193, Percent_Identity=28.4974093264249, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24581195, Length=193, Percent_Identity=28.4974093264249, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24659289, Length=207, Percent_Identity=31.8840579710145, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI28574744, Length=198, Percent_Identity=28.7878787878788, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI24662800, Length=185, Percent_Identity=27.027027027027, Blast_Score=69, Evalue=9e-12, Organism=Drosophila melanogaster, GI28574150, Length=198, Percent_Identity=29.2929292929293, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007328, Length=198, Percent_Identity=29.2929292929293, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24582014, Length=171, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24582012, Length=171, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI281363262, Length=183, Percent_Identity=30.6010928961749, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI24653245, Length=183, Percent_Identity=30.6010928961749, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 50897; Mature: 50897
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVETESLSFRFPESLDTILKDVSLSIKPGRTILTGASGSGKSTLLALFNRLYPENCDGIL CCCCCCCCEECCHHHHHHHHHCCCEECCCCEEEECCCCCCHHHHHHHHHHHCCCCCCHHH EGRLELLGRSHDDYAPGEINQRVGTVFQDPDTQFVMERVEEELVFTLENLQTPVEVIDQR HHHHHHHCCCCCCCCCCHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VTEILESLQLTEYRNRHIDSLSGGEKQRIAVACAMVGQPEWLLLDEPLTHLDPVTANRFV HHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEECCCCCEEEECCCHHHCCCCHHHHHH DWLDHLDNVNVIVVEHRAHLWGDFFDWHIELDQGRIVRNEPFQPVDDFSFTRSSLPRQAV HHHHHCCCCCEEEEECCHHHCCCEEEEEEEECCCEEECCCCCCCCCCCHHHHHCCCHHHH EHYVVDEVERDTFRLKGVTLTARIGEVIAILGPNGSGKSTFLRSLTESDRRVGLVPQSPE HHHHHHHHCCCCEEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCEEECCCCCCC HLFFMNSVEQELQFGHEESIDNVLEELSLEDKRVFHPLSLSHGQKRRLAVGIQLLSNKQL CEEEHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHEEHHHHCCCCE LAFDEPTAGQDEPSLHALEILMKRHAEKGQTILFVTHDLSFANIAHTFYLMKDGELSGPF EEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHEEEEEEEECCCCCCCC GDELWQDTERLRHYRLTGGRKRCHSMI CHHHHHHHHHHHHHHCCCCHHHHHCCC >Mature Secondary Structure MVETESLSFRFPESLDTILKDVSLSIKPGRTILTGASGSGKSTLLALFNRLYPENCDGIL CCCCCCCCEECCHHHHHHHHHCCCEECCCCEEEECCCCCCHHHHHHHHHHHCCCCCCHHH EGRLELLGRSHDDYAPGEINQRVGTVFQDPDTQFVMERVEEELVFTLENLQTPVEVIDQR HHHHHHHCCCCCCCCCCHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VTEILESLQLTEYRNRHIDSLSGGEKQRIAVACAMVGQPEWLLLDEPLTHLDPVTANRFV HHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEECCCCCEEEECCCHHHCCCCHHHHHH DWLDHLDNVNVIVVEHRAHLWGDFFDWHIELDQGRIVRNEPFQPVDDFSFTRSSLPRQAV HHHHHCCCCCEEEEECCHHHCCCEEEEEEEECCCEEECCCCCCCCCCCHHHHHCCCHHHH EHYVVDEVERDTFRLKGVTLTARIGEVIAILGPNGSGKSTFLRSLTESDRRVGLVPQSPE HHHHHHHHCCCCEEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCEEECCCCCCC HLFFMNSVEQELQFGHEESIDNVLEELSLEDKRVFHPLSLSHGQKRRLAVGIQLLSNKQL CEEEHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHEEHHHHCCCCE LAFDEPTAGQDEPSLHALEILMKRHAEKGQTILFVTHDLSFANIAHTFYLMKDGELSGPF EEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHEEEEEEEECCCCCCCC GDELWQDTERLRHYRLTGGRKRCHSMI CHHHHHHHHHHHHHHCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]