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The map label for this gene is ykoC [H]

Identifier: 229916065

GI number: 229916065

Start: 299838

End: 300572

Strand: Reverse

Name: ykoC [H]

Synonym: EAT1b_0333

Alternate gene names: 229916065

Gene position: 300572-299838 (Counterclockwise)

Preceding gene: 229916066

Following gene: 229916062

Centisome position: 10.02

GC content: 53.2

Gene sequence:

>735_bases
ATGTCACTCCATGATATGAATCCGACGATCAAGTTTGTGACGATGACGATCATCATGTTCGGGCTTGCCTTGCTCTATAA
CCCGTGGACCCCGCTCGTCATCATCGTCGGTACGTTGACGATTCAATTGCTGGCGACGGACGTGTCCTGGAAGAAGTGGA
GCCTGTTCTTGACCCCATTTCTCGTCACGGCGCTCGGGACGTTTTGGACGTCGCTCGTGTTTGGGAAGGAGCTCGGGGGA
GAGACGTGGGTGACGCTTCTCGGTCAAGATATCTCAAAAGAAGAGGCGCGCGTCGCTACGTCTCTTAGTCTCCGTGTATT
GGCGTTCACCGTGTTGTCACTTCTCTTCATGTTGACGACCGATTCGAAACGTTTCGTCATGAGTTTGATGCAACAGGCGA
GGCTTTCACCGACGATTGCCTATAGCGCGCTCGTTGGATTCCGCTTCCTTCCGTTGATGCAACGGGAGATGTATCAGCTT
CAATACGCGCATCGTCTTCGCGGCGTTCCGCTCGATACGAAATGGGAACGGATTCGACATGTACCGAAACTCCTTCTCCC
GCTGTTGGCAGGTTCGATCCGACGTGCGGAACGGGTCGCCTTCTCTATGGAGGCGAGGGGATTCACGAGTGGGAAACGGA
CCGTCTATGAGCGGATTGACGTCAAACCGTCCGATTACATATGGTCCGGTATATTCTTCACACTGTTTAGCCTTTCCATT
TGGATCGGCATATGA

Upstream 100 bases:

>100_bases
ATTTGATGAAGGACGGGGAACTCTCAGGACCATTCGGAGATGAGCTCTGGCAGGACACGGAGAGACTTCGTCATTATCGA
CTCACGGGAGGTCGAAAGCG

Downstream 100 bases:

>100_bases
AAAGACGACTCACGGAGAGTCGTCAGCTTGTTGACAAATAACATGTTCGAACTCGTCCTTCCGGCGCCTCGTCTTCCAAA
GAAATAGCCTGATCTATTCT

Product: cobalt transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MSLHDMNPTIKFVTMTIIMFGLALLYNPWTPLVIIVGTLTIQLLATDVSWKKWSLFLTPFLVTALGTFWTSLVFGKELGG
ETWVTLLGQDISKEEARVATSLSLRVLAFTVLSLLFMLTTDSKRFVMSLMQQARLSPTIAYSALVGFRFLPLMQREMYQL
QYAHRLRGVPLDTKWERIRHVPKLLLPLLAGSIRRAERVAFSMEARGFTSGKRTVYERIDVKPSDYIWSGIFFTLFSLSI
WIGI

Sequences:

>Translated_244_residues
MSLHDMNPTIKFVTMTIIMFGLALLYNPWTPLVIIVGTLTIQLLATDVSWKKWSLFLTPFLVTALGTFWTSLVFGKELGG
ETWVTLLGQDISKEEARVATSLSLRVLAFTVLSLLFMLTTDSKRFVMSLMQQARLSPTIAYSALVGFRFLPLMQREMYQL
QYAHRLRGVPLDTKWERIRHVPKLLLPLLAGSIRRAERVAFSMEARGFTSGKRTVYERIDVKPSDYIWSGIFFTLFSLSI
WIGI
>Mature_243_residues
SLHDMNPTIKFVTMTIIMFGLALLYNPWTPLVIIVGTLTIQLLATDVSWKKWSLFLTPFLVTALGTFWTSLVFGKELGGE
TWVTLLGQDISKEEARVATSLSLRVLAFTVLSLLFMLTTDSKRFVMSLMQQARLSPTIAYSALVGFRFLPLMQREMYQLQ
YAHRLRGVPLDTKWERIRHVPKLLLPLLAGSIRRAERVAFSMEARGFTSGKRTVYERIDVKPSDYIWSGIFFTLFSLSIW
IGI

Specific function: Part of the ABC transporter complex YkoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 27879; Mature: 27747

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCC
>Mature Secondary Structure 
SLHDMNPTIKFVTMTIIMFGLALLYNPWTPLVIIVGTLTIQLLATDVSWKKWSLFLTPF
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LVTALGTFWTSLVFGKELGGETWVTLLGQDISKEEARVATSLSLRVLAFTVLSLLFMLTT
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DSKRFVMSLMQQARLSPTIAYSALVGFRFLPLMQREMYQLQYAHRLRGVPLDTKWERIRH
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
VPKLLLPLLAGSIRRAERVAFSMEARGFTSGKRTVYERIDVKPSDYIWSGIFFTLFSLSI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
WIGI
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]