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The map label for this gene is ypsC [H]

Identifier: 229916051

GI number: 229916051

Start: 287049

End: 288218

Strand: Reverse

Name: ypsC [H]

Synonym: EAT1b_0319

Alternate gene names: 229916051

Gene position: 288218-287049 (Counterclockwise)

Preceding gene: 229916053

Following gene: 229916050

Centisome position: 9.61

GC content: 51.45

Gene sequence:

>1170_bases
TTGCAGATGGCAAAACGTAAACTGATTGCGACGGCAGCGATGGGAATCGAGGCACTCGTTGCAAAAGAAGTAAGGGATTT
AGGATACACGTGCGAGGTCGAGAATGGACGGATTTATATCGACGCGGAAATGGAAGACATTCCACGCCTCAACATGTGGT
TACGCACAGCAGACCGGGTCAAGCTCGTCGTTGCCGAGTTCAAGGCGACAACGTTCACAGAATTGTTTGACGGGGTCGTG
GCGTTACCATGGACCGACCTCATGCCGTGGGACGCGGCGTTCACGGTGGACGGACGCTCGGTCAAATCAAAACTGTTCTC
GATTCGTGACTGTCAGAAAATCACGGAGAAGGCGATTGTTGAAGCGATGCAACGCGGCTATCGTAAGGAAGGGGAATGGT
TGCCGAAGTCAGGCGCCAAATTCCCGATTGAAGTCGCCCTATTGAAAGATGTGGCGACAATCACGATCGACACGTCCGGT
CCGCTCCATCGTCGTGGCTACCGTGAGCTTCATTCACAAGCACCACTCAAAGAGACGATGGCTGCAGCGATGATTCAATT
GACGAACTGGCGTCCGGACATGCCGTTTTATGATGTGTTCACAGGTTCTGGGACGCTCGCCATCGAGGCGGCGATGATTG
GACGAAATATCGCGCCGGGTATCAACCGTGAATACTTCGCTCAAGATTGGACATGCATTCCGAAAAAAGCTTGGTATGCG
GCAATCAATGAAGCAAACGAGAAAGCGGAGTGGGATAAACCGCTAAAAATCTATGGAATCGACCTCGATCCGCGGATGGT
CAAACTCGCAAAAGACAATGCGGAACTCGCTGACGTCCGCGATGCGATCACGTTCGTCCATAGTGACGCAGCCGCACTGA
AGCCGAAAGAAGAGTACGGAGTCATCATCGGTAACCCTCCGTATGGGGAACGACTTCAGTCAGAAGAAGAGATCATCGAC
TTGTATGAGCGAATCGGAGAACAATATGCGAAATACCCTGGTTACAGCGTCTACATGTTGACGAGTTATGAAGACTTCGA
GAAGGCATACGGACGCCCTGCGACGAAGCGTCGGAAGTTGTACAACGGAAATATCGAAACGCAATATTATCAATACTTCG
GAAAGCGCCGTCCACGTCCGGACCGTGACGAGAAACCGAAATCAGAATAA

Upstream 100 bases:

>100_bases
AACGACAAGGAGTTCAAGCACATATACTTGAGCTCCTTTTTTCATGATTTTTTTACAACTTACAAAATGACTGAAAGATA
TTTATGTAGAAGGAAGGCGA

Downstream 100 bases:

>100_bases
TGAATCCATGACCGTTCAATTGAGCGGTCATTTTCTGTTTTATTAGAGCAAACTCTCTTGTTTCATCCTCCGTCTAACAG
GTTATACATAACATATGTAT

Product: RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MQMAKRKLIATAAMGIEALVAKEVRDLGYTCEVENGRIYIDAEMEDIPRLNMWLRTADRVKLVVAEFKATTFTELFDGVV
ALPWTDLMPWDAAFTVDGRSVKSKLFSIRDCQKITEKAIVEAMQRGYRKEGEWLPKSGAKFPIEVALLKDVATITIDTSG
PLHRRGYRELHSQAPLKETMAAAMIQLTNWRPDMPFYDVFTGSGTLAIEAAMIGRNIAPGINREYFAQDWTCIPKKAWYA
AINEANEKAEWDKPLKIYGIDLDPRMVKLAKDNAELADVRDAITFVHSDAAALKPKEEYGVIIGNPPYGERLQSEEEIID
LYERIGEQYAKYPGYSVYMLTSYEDFEKAYGRPATKRRKLYNGNIETQYYQYFGKRRPRPDRDEKPKSE

Sequences:

>Translated_389_residues
MQMAKRKLIATAAMGIEALVAKEVRDLGYTCEVENGRIYIDAEMEDIPRLNMWLRTADRVKLVVAEFKATTFTELFDGVV
ALPWTDLMPWDAAFTVDGRSVKSKLFSIRDCQKITEKAIVEAMQRGYRKEGEWLPKSGAKFPIEVALLKDVATITIDTSG
PLHRRGYRELHSQAPLKETMAAAMIQLTNWRPDMPFYDVFTGSGTLAIEAAMIGRNIAPGINREYFAQDWTCIPKKAWYA
AINEANEKAEWDKPLKIYGIDLDPRMVKLAKDNAELADVRDAITFVHSDAAALKPKEEYGVIIGNPPYGERLQSEEEIID
LYERIGEQYAKYPGYSVYMLTSYEDFEKAYGRPATKRRKLYNGNIETQYYQYFGKRRPRPDRDEKPKSE
>Mature_389_residues
MQMAKRKLIATAAMGIEALVAKEVRDLGYTCEVENGRIYIDAEMEDIPRLNMWLRTADRVKLVVAEFKATTFTELFDGVV
ALPWTDLMPWDAAFTVDGRSVKSKLFSIRDCQKITEKAIVEAMQRGYRKEGEWLPKSGAKFPIEVALLKDVATITIDTSG
PLHRRGYRELHSQAPLKETMAAAMIQLTNWRPDMPFYDVFTGSGTLAIEAAMIGRNIAPGINREYFAQDWTCIPKKAWYA
AINEANEKAEWDKPLKIYGIDLDPRMVKLAKDNAELADVRDAITFVHSDAAALKPKEEYGVIIGNPPYGERLQSEEEIID
LYERIGEQYAKYPGYSVYMLTSYEDFEKAYGRPATKRRKLYNGNIETQYYQYFGKRRPRPDRDEKPKSE

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=354, Percent_Identity=32.4858757062147, Blast_Score=169, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 44492; Mature: 44492

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQMAKRKLIATAAMGIEALVAKEVRDLGYTCEVENGRIYIDAEMEDIPRLNMWLRTADRV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCHHHCCCHHHHHHHHHHH
KLVVAEFKATTFTELFDGVVALPWTDLMPWDAAFTVDGRSVKSKLFSIRDCQKITEKAIV
EEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
EAMQRGYRKEGEWLPKSGAKFPIEVALLKDVATITIDTSGPLHRRGYRELHSQAPLKETM
HHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCHHHHH
AAAMIQLTNWRPDMPFYDVFTGSGTLAIEAAMIGRNIAPGINREYFAQDWTCIPKKAWYA
HHHHHHHHCCCCCCCCEEEECCCCCEEEEEEHHCCCCCCCCCHHHHCCCCEECCCHHHHH
AINEANEKAEWDKPLKIYGIDLDPRMVKLAKDNAELADVRDAITFVHSDAAALKPKEEYG
HHHHCCCCCCCCCCEEEEEECCCCHHEEEECCCCHHHHHHHHHHHHCCCHHHCCCHHHCC
VIIGNPPYGERLQSEEEIIDLYERIGEQYAKYPGYSVYMLTSYEDFEKAYGRPATKRRKL
EEECCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCCHHHHHH
YNGNIETQYYQYFGKRRPRPDRDEKPKSE
HCCCCCHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQMAKRKLIATAAMGIEALVAKEVRDLGYTCEVENGRIYIDAEMEDIPRLNMWLRTADRV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCHHHCCCHHHHHHHHHHH
KLVVAEFKATTFTELFDGVVALPWTDLMPWDAAFTVDGRSVKSKLFSIRDCQKITEKAIV
EEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
EAMQRGYRKEGEWLPKSGAKFPIEVALLKDVATITIDTSGPLHRRGYRELHSQAPLKETM
HHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCHHHHH
AAAMIQLTNWRPDMPFYDVFTGSGTLAIEAAMIGRNIAPGINREYFAQDWTCIPKKAWYA
HHHHHHHHCCCCCCCCEEEECCCCCEEEEEEHHCCCCCCCCCHHHHCCCCEECCCHHHHH
AINEANEKAEWDKPLKIYGIDLDPRMVKLAKDNAELADVRDAITFVHSDAAALKPKEEYG
HHHHCCCCCCCCCCEEEEEECCCCHHEEEECCCCHHHHHHHHHHHHCCCHHHCCCHHHCC
VIIGNPPYGERLQSEEEIIDLYERIGEQYAKYPGYSVYMLTSYEDFEKAYGRPATKRRKL
EEECCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCCHHHHHH
YNGNIETQYYQYFGKRRPRPDRDEKPKSE
HCCCCCHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]