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The map label for this gene is yckA [H]

Identifier: 229916002

GI number: 229916002

Start: 236847

End: 237545

Strand: Reverse

Name: yckA [H]

Synonym: EAT1b_0270

Alternate gene names: 229916002

Gene position: 237545-236847 (Counterclockwise)

Preceding gene: 229916003

Following gene: 229916001

Centisome position: 7.92

GC content: 49.07

Gene sequence:

>699_bases
ATGACGTTCTCAGAAATTAAATGGGACGCCATCTTTGACGTAGACCTGGCGATTCAATCATTTCCTTATCTATTGGGTGG
ATTACCGAATACACTTTGGATTTCGTTCGTCAGTATGTTTTTTGGTCTCTTGCTCGGTCTTTTGTTGGCGCTCGGGAAGT
TGTCTCCGACACGACTCCTTCGATACCCGTCAACTTTCTATATCTCGTTCATGCGTGGCGTACCTATCTTGATCATTCTG
TTCATCCTCTATTCGGGATTCCCGTTCATCGGGATCGAGTTCGCCGCTTTGACGGCAGCCATTCTCGGATTCAGTTTGAA
TTCCGCCGCCTATATCGCTGAAATCATCCGCTCCTCGATTCGTGCGGTCGATGACGGACAGGTGGAGGCGGCTCGTTCAC
TCGGGATGGGGAAATGGTTAACATTGAAGGGGGTCGTCTTACCACAGGCGACACGGATCGCCCTTCCGCCGCTCTCGAAC
GTTTTTCTCGATTTGATTAAAGCCAGTTCGCTCGCCGCAATGATCACGGTACCTGAGATCTTCAACAAGGCCAAGATCGT
CGGTGGTCGGGAGTTCGACTACATGACAGTGTATATCGTCGTGGCGTTGATCTACTGGGCAATTTGTACGTTCATGTCCT
TCTTCCAAGAATGGCTCGAACGTCATTTTGAACGATATTTAGATACTCCGAAACGTTGA

Upstream 100 bases:

>100_bases
GGGACGGTCAAGGAACTATCTGAGCAATTCTACAATGGCGCGGATGTTTCGGTAGAATCAGACGTAGACGCAACAATCGT
CGAAACGAAGTAATGACGGC

Downstream 100 bases:

>100_bases
CTGACTGGCTTATGCCGGTCGGTCTTTTTTAGTGAATTGGATTTTTGATACATCTCCTGAACCGATTATGCTATGATTTT
CTTAATTATCAGAAAAATAT

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTFSEIKWDAIFDVDLAIQSFPYLLGGLPNTLWISFVSMFFGLLLGLLLALGKLSPTRLLRYPSTFYISFMRGVPILIIL
FILYSGFPFIGIEFAALTAAILGFSLNSAAYIAEIIRSSIRAVDDGQVEAARSLGMGKWLTLKGVVLPQATRIALPPLSN
VFLDLIKASSLAAMITVPEIFNKAKIVGGREFDYMTVYIVVALIYWAICTFMSFFQEWLERHFERYLDTPKR

Sequences:

>Translated_232_residues
MTFSEIKWDAIFDVDLAIQSFPYLLGGLPNTLWISFVSMFFGLLLGLLLALGKLSPTRLLRYPSTFYISFMRGVPILIIL
FILYSGFPFIGIEFAALTAAILGFSLNSAAYIAEIIRSSIRAVDDGQVEAARSLGMGKWLTLKGVVLPQATRIALPPLSN
VFLDLIKASSLAAMITVPEIFNKAKIVGGREFDYMTVYIVVALIYWAICTFMSFFQEWLERHFERYLDTPKR
>Mature_231_residues
TFSEIKWDAIFDVDLAIQSFPYLLGGLPNTLWISFVSMFFGLLLGLLLALGKLSPTRLLRYPSTFYISFMRGVPILIILF
ILYSGFPFIGIEFAALTAAILGFSLNSAAYIAEIIRSSIRAVDDGQVEAARSLGMGKWLTLKGVVLPQATRIALPPLSNV
FLDLIKASSLAAMITVPEIFNKAKIVGGREFDYMTVYIVVALIYWAICTFMSFFQEWLERHFERYLDTPKR

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=219, Percent_Identity=46.5753424657534, Blast_Score=205, Evalue=2e-54,
Organism=Escherichia coli, GI87082239, Length=205, Percent_Identity=36.5853658536585, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787030, Length=222, Percent_Identity=31.5315315315315, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1788645, Length=214, Percent_Identity=30.3738317757009, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1786873, Length=219, Percent_Identity=30.1369863013699, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787086, Length=221, Percent_Identity=30.7692307692308, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI48994930, Length=88, Percent_Identity=51.1363636363636, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787087, Length=225, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788646, Length=212, Percent_Identity=25, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786874, Length=217, Percent_Identity=24.8847926267281, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 26063; Mature: 25932

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFSEIKWDAIFDVDLAIQSFPYLLGGLPNTLWISFVSMFFGLLLGLLLALGKLSPTRLL
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RYPSTFYISFMRGVPILIILFILYSGFPFIGIEFAALTAAILGFSLNSAAYIAEIIRSSI
HCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RAVDDGQVEAARSLGMGKWLTLKGVVLPQATRIALPPLSNVFLDLIKASSLAAMITVPEI
HCCCCCHHHHHHHCCCCCEEEECCEECCCCCEEECCCHHHHHHHHHHHHHHHHHEEHHHH
FNKAKIVGGREFDYMTVYIVVALIYWAICTFMSFFQEWLERHFERYLDTPKR
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TFSEIKWDAIFDVDLAIQSFPYLLGGLPNTLWISFVSMFFGLLLGLLLALGKLSPTRLL
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RYPSTFYISFMRGVPILIILFILYSGFPFIGIEFAALTAAILGFSLNSAAYIAEIIRSSI
HCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RAVDDGQVEAARSLGMGKWLTLKGVVLPQATRIALPPLSNVFLDLIKASSLAAMITVPEI
HCCCCCHHHHHHHCCCCCEEEECCEECCCCCEEECCCHHHHHHHHHHHHHHHHHEEHHHH
FNKAKIVGGREFDYMTVYIVVALIYWAICTFMSFFQEWLERHFERYLDTPKR
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]