Click here to switch to the map view.

The map label for this gene is yydK [H]

Identifier: 229915984

GI number: 229915984

Start: 220409

End: 221119

Strand: Reverse

Name: yydK [H]

Synonym: EAT1b_0252

Alternate gene names: 229915984

Gene position: 221119-220409 (Counterclockwise)

Preceding gene: 229915992

Following gene: 229915974

Centisome position: 7.37

GC content: 48.1

Gene sequence:

>711_bases
ATGCTAAAATATCAACAGATTGCGAATGAAATCGAACAATACATTAACGAACAACAGTTAAAACAGGGGGATAAGCTCCC
TGTCCTGGAGCAGATGATGAATCAATATGCAGTGAGTAAGAGCACCATCACGAAAGCATTAGAGCTGCTCGAACGAAAAG
GGGTCATCTTTCAACTGCGGGGAAGCGGCATCTTCGTCAGACGACATAATCGACCCGGCTATATGAGCCTCTTCTCCACC
CAAGGATTCAAGAGCAATCTCGGAGACCGTGTGTTGACGTCTGATGTGATTGATGTGTCTGTCATGAAGCCAGATGCGTT
GGTGGCCGAGAACCTCGGGATTGGCGTGTCTGACGATGTGTACCGGGTCGAACGGGTGAGATATGTGGACGGGGAAGTGC
TCTGTCATGAGGAATCCTATTATGTGAAAGCCATTGTCCCTTATTTGAATCGAGAGATCGTGGCGGACTCGATTTTCGAT
TACGTTCAATCTGCACTCGGCGTCACGATTGGGTTTTCTGACATGTATCTACAGGTCGATCGATTGACGGAAGGGGAAGC
AGGCCACCTCGGATTGCAAGAGAATGATCCGACACTTCGCATTGAAACCATCTTTCATCTGACGAACGGAAAACCTTTCG
ACTATTCACGGATCACCTACCACTATGCACATTCCCAGTTCGTCATTCAGGCGAACGGACCCTATATGTGA

Upstream 100 bases:

>100_bases
ATAATTGTACCGGTAAAATTTAACAAGGTCGATACACTTAAACATTTTTTTGTTTTCTCATGATATAATGAAATCAGTGA
CGAAAAAGTGAGGAATGACC

Downstream 100 bases:

>100_bases
AGAAACCCCTCATGCGCGCATGAGGGGTTGTTCGTCGCAAGATGAATATCACTTCACGACCGGGAGATTGACCTGTTCGA
CCCAATCGTCAATGAACCGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MLKYQQIANEIEQYINEQQLKQGDKLPVLEQMMNQYAVSKSTITKALELLERKGVIFQLRGSGIFVRRHNRPGYMSLFST
QGFKSNLGDRVLTSDVIDVSVMKPDALVAENLGIGVSDDVYRVERVRYVDGEVLCHEESYYVKAIVPYLNREIVADSIFD
YVQSALGVTIGFSDMYLQVDRLTEGEAGHLGLQENDPTLRIETIFHLTNGKPFDYSRITYHYAHSQFVIQANGPYM

Sequences:

>Translated_236_residues
MLKYQQIANEIEQYINEQQLKQGDKLPVLEQMMNQYAVSKSTITKALELLERKGVIFQLRGSGIFVRRHNRPGYMSLFST
QGFKSNLGDRVLTSDVIDVSVMKPDALVAENLGIGVSDDVYRVERVRYVDGEVLCHEESYYVKAIVPYLNREIVADSIFD
YVQSALGVTIGFSDMYLQVDRLTEGEAGHLGLQENDPTLRIETIFHLTNGKPFDYSRITYHYAHSQFVIQANGPYM
>Mature_236_residues
MLKYQQIANEIEQYINEQQLKQGDKLPVLEQMMNQYAVSKSTITKALELLERKGVIFQLRGSGIFVRRHNRPGYMSLFST
QGFKSNLGDRVLTSDVIDVSVMKPDALVAENLGIGVSDDVYRVERVRYVDGEVLCHEESYYVKAIVPYLNREIVADSIFD
YVQSALGVTIGFSDMYLQVDRLTEGEAGHLGLQENDPTLRIETIFHLTNGKPFDYSRITYHYAHSQFVIQANGPYM

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=231, Percent_Identity=27.2727272727273, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1790118, Length=223, Percent_Identity=26.9058295964126, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1790540, Length=219, Percent_Identity=28.310502283105, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788418, Length=222, Percent_Identity=26.1261261261261, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26917; Mature: 26917

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKYQQIANEIEQYINEQQLKQGDKLPVLEQMMNQYAVSKSTITKALELLERKGVIFQLR
CCCHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
GSGIFVRRHNRPGYMSLFSTQGFKSNLGDRVLTSDVIDVSVMKPDALVAENLGIGVSDDV
CCEEEEEECCCCCEEEEEECCCCHHCCCCHHHHCCCEEEEEECCCHHHHHCCCCCCCCCH
YRVERVRYVDGEVLCHEESYYVKAIVPYLNREIVADSIFDYVQSALGVTIGFSDMYLQVD
HHHHHEEEECCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCEEECCHHHEEEEE
RLTEGEAGHLGLQENDPTLRIETIFHLTNGKPFDYSRITYHYAHSQFVIQANGPYM
CCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEECEEEEEEECCCCC
>Mature Secondary Structure
MLKYQQIANEIEQYINEQQLKQGDKLPVLEQMMNQYAVSKSTITKALELLERKGVIFQLR
CCCHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
GSGIFVRRHNRPGYMSLFSTQGFKSNLGDRVLTSDVIDVSVMKPDALVAENLGIGVSDDV
CCEEEEEECCCCCEEEEEECCCCHHCCCCHHHHCCCEEEEEECCCHHHHHCCCCCCCCCH
YRVERVRYVDGEVLCHEESYYVKAIVPYLNREIVADSIFDYVQSALGVTIGFSDMYLQVD
HHHHHEEEECCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCEEECCHHHEEEEE
RLTEGEAGHLGLQENDPTLRIETIFHLTNGKPFDYSRITYHYAHSQFVIQANGPYM
CCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEECEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]