| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is yfiS [H]
Identifier: 229915947
GI number: 229915947
Start: 186656
End: 187879
Strand: Reverse
Name: yfiS [H]
Synonym: EAT1b_0215
Alternate gene names: 229915947
Gene position: 187879-186656 (Counterclockwise)
Preceding gene: 229915949
Following gene: 229915944
Centisome position: 6.26
GC content: 46.98
Gene sequence:
>1224_bases TTGAATTCGTTTCGAAAAACCTCTGCGCTACTGCTCGTCAGTGTCGGAATCTCAAACCTTGGTGCCTGGATATACTTCAT TGCGCTCAACTTGATTATCCTAGAGATGACTGGATCCCCTTTCGCCGTCTCGATTCTGTATGTATTAGTCCCGCTCGCCT CGCTCGTCTCGAATCTTTGGTCAGGTAGCCTGATTGACCGGGTCGATACGAGACGACTGATGATGTTACTGGATGGTCTG CGTGCGTTCCTCGTATTCAGCTTAGGCTGGATTGATTCACTGTGGCTCATCTACGGGATTGTCTTTCTTCTCAATGTGAT GAGCTCGTTATTCGAATCATCGAGTCTGGTCTACATGACGCAACTCGTACCTGCCTCGAACCGACAAAAGTTCAATGCGA TGAAAAACTTTGTACAGTCATCCGGGTTTATTTTAGGTCCGACGATTGCGGGTCTACTCTTTCTAGTCGGGAGCCCGACA TTTGCGATTTTTGTGAACGCCTTCGCACTCATTGGATCGGTCGGTATGCTGATGCTCCTCCCATCTCACCTTCGAACGAA TGCGCCTGTTGAACCATTCTCTATGCGGATGATCATTGACGATTGGAAGGTTGTCATCCGATTCGCTTCGAATGGCAGAT ATGTGATGCTCATTTATGGATTGTTCTGTGTCATGACCATCTTCATGTCTGGACTCGATTCGTTGGAGGCGTCATTCGCG ACCCAAGTCCTTCACTTGTCTGAAAGCCGATATGGCTTTCTCGTCAGTATCGCTGGGATTGGGATTATCTTTGGATCACT CATCAATTCAAGATGGAGTCACCGCTTGTCCTTATCGTTTTGTATTGGATTCGGGGCGATCATGACACCAGTCGGCTATC TTCTTTTCGCAAGTTCATCGTCATTCATGATGGCCTCGGTTGGATTTTTTGTCCTGACATTCGCGCTTGCCTTTGCAAAT ACAGGATTCTTATCATTCTATCAACACCATGTCCCGGTCGAAATCATGGGTAGGTTCTCTGGCGCTATCAATGTGGCAGA GTCGCTACTCGTCATCCTACTCACATTTGGGATTGGACTTCTTGCCGACATGGTTGGGATTCGTCCAGTCTATCTCGCAT TCTCGATTATCTTCTTCCTTGTTGGTTGTTACACCATACATGTCATGCGCGACCGTTCGAAACGGGAGTATTTCTCTCAC AATCAAATCAAAGAAGTTTCTTAA
Upstream 100 bases:
>100_bases GGGTGGCACCACGATGAGAATCTCGTCCCCAAGAATTCGTTCTTGGGGGTGGGATTTTTTTGCGTTCCGAAAGTGATCAA AAATAGAAGGAGTGATTGAC
Downstream 100 bases:
>100_bases GTCATGAGCCGGTCGTTTATATGCGACCGGCTTGTTCGATTCGATGAATCGCTTCGATGATTGTGTCTGGTCGTTGTAAA TGAATTTGGTGTCCTGCCTT
Product: major facilitator superfamily MFS_1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 407; Mature: 407
Protein sequence:
>407_residues MNSFRKTSALLLVSVGISNLGAWIYFIALNLIILEMTGSPFAVSILYVLVPLASLVSNLWSGSLIDRVDTRRLMMLLDGL RAFLVFSLGWIDSLWLIYGIVFLLNVMSSLFESSSLVYMTQLVPASNRQKFNAMKNFVQSSGFILGPTIAGLLFLVGSPT FAIFVNAFALIGSVGMLMLLPSHLRTNAPVEPFSMRMIIDDWKVVIRFASNGRYVMLIYGLFCVMTIFMSGLDSLEASFA TQVLHLSESRYGFLVSIAGIGIIFGSLINSRWSHRLSLSFCIGFGAIMTPVGYLLFASSSSFMMASVGFFVLTFALAFAN TGFLSFYQHHVPVEIMGRFSGAINVAESLLVILLTFGIGLLADMVGIRPVYLAFSIIFFLVGCYTIHVMRDRSKREYFSH NQIKEVS
Sequences:
>Translated_407_residues MNSFRKTSALLLVSVGISNLGAWIYFIALNLIILEMTGSPFAVSILYVLVPLASLVSNLWSGSLIDRVDTRRLMMLLDGL RAFLVFSLGWIDSLWLIYGIVFLLNVMSSLFESSSLVYMTQLVPASNRQKFNAMKNFVQSSGFILGPTIAGLLFLVGSPT FAIFVNAFALIGSVGMLMLLPSHLRTNAPVEPFSMRMIIDDWKVVIRFASNGRYVMLIYGLFCVMTIFMSGLDSLEASFA TQVLHLSESRYGFLVSIAGIGIIFGSLINSRWSHRLSLSFCIGFGAIMTPVGYLLFASSSSFMMASVGFFVLTFALAFAN TGFLSFYQHHVPVEIMGRFSGAINVAESLLVILLTFGIGLLADMVGIRPVYLAFSIIFFLVGCYTIHVMRDRSKREYFSH NQIKEVS >Mature_407_residues MNSFRKTSALLLVSVGISNLGAWIYFIALNLIILEMTGSPFAVSILYVLVPLASLVSNLWSGSLIDRVDTRRLMMLLDGL RAFLVFSLGWIDSLWLIYGIVFLLNVMSSLFESSSLVYMTQLVPASNRQKFNAMKNFVQSSGFILGPTIAGLLFLVGSPT FAIFVNAFALIGSVGMLMLLPSHLRTNAPVEPFSMRMIIDDWKVVIRFASNGRYVMLIYGLFCVMTIFMSGLDSLEASFA TQVLHLSESRYGFLVSIAGIGIIFGSLINSRWSHRLSLSFCIGFGAIMTPVGYLLFASSSSFMMASVGFFVLTFALAFAN TGFLSFYQHHVPVEIMGRFSGAINVAESLLVILLTFGIGLLADMVGIRPVYLAFSIIFFLVGCYTIHVMRDRSKREYFSH NQIKEVS
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 45036; Mature: 45036
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSFRKTSALLLVSVGISNLGAWIYFIALNLIILEMTGSPFAVSILYVLVPLASLVSNLW CCCHHHHHHHHHEECCHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHH SGSLIDRVDTRRLMMLLDGLRAFLVFSLGWIDSLWLIYGIVFLLNVMSSLFESSSLVYMT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE QLVPASNRQKFNAMKNFVQSSGFILGPTIAGLLFLVGSPTFAIFVNAFALIGSVGMLMLL ECCCCCCHHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH PSHLRTNAPVEPFSMRMIIDDWKVVIRFASNGRYVMLIYGLFCVMTIFMSGLDSLEASFA HHHHCCCCCCCCHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHHHHHHCHHHHHHHHH TQVLHLSESRYGFLVSIAGIGIIFGSLINSRWSHRLSLSFCIGFGAIMTPVGYLLFASSS HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SFMMASVGFFVLTFALAFANTGFLSFYQHHVPVEIMGRFSGAINVAESLLVILLTFGIGL CHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LADMVGIRPVYLAFSIIFFLVGCYTIHVMRDRSKREYFSHNQIKEVS HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCC >Mature Secondary Structure MNSFRKTSALLLVSVGISNLGAWIYFIALNLIILEMTGSPFAVSILYVLVPLASLVSNLW CCCHHHHHHHHHEECCHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHH SGSLIDRVDTRRLMMLLDGLRAFLVFSLGWIDSLWLIYGIVFLLNVMSSLFESSSLVYMT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE QLVPASNRQKFNAMKNFVQSSGFILGPTIAGLLFLVGSPTFAIFVNAFALIGSVGMLMLL ECCCCCCHHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH PSHLRTNAPVEPFSMRMIIDDWKVVIRFASNGRYVMLIYGLFCVMTIFMSGLDSLEASFA HHHHCCCCCCCCHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHHHHHHCHHHHHHHHH TQVLHLSESRYGFLVSIAGIGIIFGSLINSRWSHRLSLSFCIGFGAIMTPVGYLLFASSS HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SFMMASVGFFVLTFALAFANTGFLSFYQHHVPVEIMGRFSGAINVAESLLVILLTFGIGL CHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LADMVGIRPVYLAFSIIFFLVGCYTIHVMRDRSKREYFSHNQIKEVS HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8946165; 9384377 [H]