| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is 229915908
Identifier: 229915908
GI number: 229915908
Start: 152307
End: 153341
Strand: Reverse
Name: 229915908
Synonym: EAT1b_0176
Alternate gene names: NA
Gene position: 153341-152307 (Counterclockwise)
Preceding gene: 229915911
Following gene: 229915904
Centisome position: 5.11
GC content: 53.24
Gene sequence:
>1035_bases ATGGTCATTATTCAAGGAATCGCACTTTTACTGCTCATCCTCGCCTTGTTCACGCTGTTTAGTTATAAGGCGCCATTCGG AATGAAGGCAATGGGCGCCCTTGCTGGAGCGGCCATCGCGAGTTTCCTCGTCGAAGCGTTTAATGCGTATGCCATCGGCG GATTGCTACCACTCCCTCTTTATGAAGAAGTCGGTCAGGCGGCAGGCGCCTTGTCGGGTCCTGCCGCTGCGGCACTCGTC GCCATCGCACTCGGGATCAACCCCGTCTATAGTTTGATGATCGGGTTGTCCGTATCAGGATTCGGAATCCTTCCTGGATT TTTCGCCGGTTACATCTTGGCTTTAGCCGGCACTCGAATCAATCGCTATCTGCCGACCGGCGTCGATATGATTTTCTACG TCATCGTGATGGCACCGCTCGCCCGTCTCGTCGCGACCGGGGTAGACCCACTCGTGACAAATACACTTGAACAAATCGGA GCTGTCATCGAACTCGCAGCAACTCAAAATCCGGTCGTCATGGGTCTCGTCTTAGGAGGGATCGTCACGGTCGTATCGAC ATCACCTCTCAGTTCGATGGCCTTGACGGCGATGCTCGGTTTGACCGGGGTCCCGATGGCGATTGCCGCGCTCGCGTTGA CCGCGTCCATCTCAATGAATTACTTGTTGTTCCGTCAATTGAAAATCGGCACAAAGAAAGATCAGCTCTCTGTCGCCATC GAACCGTTGACGCAAGCTGACCTCATTTCTGCTAACCCGATTCCGATTTACAGTGTCAACTTTGTCGGTGGAGCCATCGC CGGATTGATTGTCGCCATGACCGGTATGATCAACGATGCGCCGGGTTCGGCAGCCGGGATTCCGGGACTTCTAGTCATGT ATGGTTTCAACGATTGGCAAACGGTCACCTTCACAGCCGTCGTGCTGTTCATCCTTGGGATCGGTTTCGGCTTGATTGGA AGTCGTTTGTTCAAAAATTTCCCGATTGTCCGTCATACGGAAAAAGTCGAATCGACAGAAGAAGATGCGGCCTAA
Upstream 100 bases:
>100_bases AATTTTGATTTTTCTTCTGAAAATGGCTTTACAGAAGTCTTTCTATGCACGAATATAGAATAAATTATGAATAAATAGAG ATAGAAAGAAGGAAGAGTTT
Downstream 100 bases:
>100_bases TCAAAAAATCGATGCACGCTCGAACGAATTGTTCAGCGGCATCGATTTTTTATTATGACTCGTATGATTGTTCTTACAAT AGAAAAGTGTCGACACGTTC
Product: membrane protein; regulatory protein
Products: NA
Alternate protein names: Regulatory Protein; Regulatory Protein PfoR; Transcriptional Regulator; Perfringolysin O Regulatory Protein; Transcriptional Regulator PfoR
Number of amino acids: Translated: 344; Mature: 344
Protein sequence:
>344_residues MVIIQGIALLLLILALFTLFSYKAPFGMKAMGALAGAAIASFLVEAFNAYAIGGLLPLPLYEEVGQAAGALSGPAAAALV AIALGINPVYSLMIGLSVSGFGILPGFFAGYILALAGTRINRYLPTGVDMIFYVIVMAPLARLVATGVDPLVTNTLEQIG AVIELAATQNPVVMGLVLGGIVTVVSTSPLSSMALTAMLGLTGVPMAIAALALTASISMNYLLFRQLKIGTKKDQLSVAI EPLTQADLISANPIPIYSVNFVGGAIAGLIVAMTGMINDAPGSAAGIPGLLVMYGFNDWQTVTFTAVVLFILGIGFGLIG SRLFKNFPIVRHTEKVESTEEDAA
Sequences:
>Translated_344_residues MVIIQGIALLLLILALFTLFSYKAPFGMKAMGALAGAAIASFLVEAFNAYAIGGLLPLPLYEEVGQAAGALSGPAAAALV AIALGINPVYSLMIGLSVSGFGILPGFFAGYILALAGTRINRYLPTGVDMIFYVIVMAPLARLVATGVDPLVTNTLEQIG AVIELAATQNPVVMGLVLGGIVTVVSTSPLSSMALTAMLGLTGVPMAIAALALTASISMNYLLFRQLKIGTKKDQLSVAI EPLTQADLISANPIPIYSVNFVGGAIAGLIVAMTGMINDAPGSAAGIPGLLVMYGFNDWQTVTFTAVVLFILGIGFGLIG SRLFKNFPIVRHTEKVESTEEDAA >Mature_344_residues MVIIQGIALLLLILALFTLFSYKAPFGMKAMGALAGAAIASFLVEAFNAYAIGGLLPLPLYEEVGQAAGALSGPAAAALV AIALGINPVYSLMIGLSVSGFGILPGFFAGYILALAGTRINRYLPTGVDMIFYVIVMAPLARLVATGVDPLVTNTLEQIG AVIELAATQNPVVMGLVLGGIVTVVSTSPLSSMALTAMLGLTGVPMAIAALALTASISMNYLLFRQLKIGTKKDQLSVAI EPLTQADLISANPIPIYSVNFVGGAIAGLIVAMTGMINDAPGSAAGIPGLLVMYGFNDWQTVTFTAVVLFILGIGFGLIG SRLFKNFPIVRHTEKVESTEEDAA
Specific function: Unknown
COG id: COG1299
COG function: function code G; Phosphotransferase system, fructose-specific IIC component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35482; Mature: 35482
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVIIQGIALLLLILALFTLFSYKAPFGMKAMGALAGAAIASFLVEAFNAYAIGGLLPLPL CEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH YEEVGQAAGALSGPAAAALVAIALGINPVYSLMIGLSVSGFGILPGFFAGYILALAGTRI HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH NRYLPTGVDMIFYVIVMAPLARLVATGVDPLVTNTLEQIGAVIELAATQNPVVMGLVLGG HHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH IVTVVSTSPLSSMALTAMLGLTGVPMAIAALALTASISMNYLLFRQLKIGTKKDQLSVAI HHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEE EPLTQADLISANPIPIYSVNFVGGAIAGLIVAMTGMINDAPGSAAGIPGLLVMYGFNDWQ CCCCHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCH TVTFTAVVLFILGIGFGLIGSRLFKNFPIVRHTEKVESTEEDAA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC >Mature Secondary Structure MVIIQGIALLLLILALFTLFSYKAPFGMKAMGALAGAAIASFLVEAFNAYAIGGLLPLPL CEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH YEEVGQAAGALSGPAAAALVAIALGINPVYSLMIGLSVSGFGILPGFFAGYILALAGTRI HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH NRYLPTGVDMIFYVIVMAPLARLVATGVDPLVTNTLEQIGAVIELAATQNPVVMGLVLGG HHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH IVTVVSTSPLSSMALTAMLGLTGVPMAIAALALTASISMNYLLFRQLKIGTKKDQLSVAI HHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEE EPLTQADLISANPIPIYSVNFVGGAIAGLIVAMTGMINDAPGSAAGIPGLLVMYGFNDWQ CCCCHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCH TVTFTAVVLFILGIGFGLIGSRLFKNFPIVRHTEKVESTEEDAA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA