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The map label for this gene is dnaQ

Identifier: 229587086

GI number: 229587086

Start: 1043000

End: 1043689

Strand: Direct

Name: dnaQ

Synonym: RAF_ORF1020

Alternate gene names: 229587086

Gene position: 1043000-1043689 (Clockwise)

Preceding gene: 229587085

Following gene: 229587087

Centisome position: 81.58

GC content: 33.19

Gene sequence:

>690_bases
ATGTCGAGTTTAAGAGAAATAATTTTAGATACCGAGACTACGGGACTTGACCCACGACAAGGTCATCGAATCGTTGAGAT
CGGTGCTATTGAGATGGTAAATAAGGTATTAACAGGCAGGAATTTTCATTTTTATATTAATCCTGAGCGAGATATGCCGT
TTGAGGCTTATAGAATTCATGGCATATCCGGCGAATTTTTAAAAGACAAGCCTCTATTTCATACAATAGCCGATGATTTT
TTAGAGTTTATTTCAGATAGCAAACTGATTATTCATAATGCTCCTTTCGATATTAAATTTCTAAATCACGAATTATCATT
ATTAAAAAGAACCGACATTAAACTCTTGGAACTAGCAAATACTATTGATACTTTAGTAATGGCTAGAAGCATATTTCCAG
GCTCAAAATATAATCTTGATGCATTATGTAAAAGATTTAAAGTTGATAATTCAGGTAGGCAGCTTCACGGAGCTTTGAAA
GATGCCGCATTACTTGCAGAAGTATATGTAGAGTTAATGGGCGGTAGACAATCCGCTTTTAAAATGGTTGATAAATCTGC
CGTAATAAATAATTTAGCAACTAATCAAGTAAATAACAAAACAGAGCAAACTACTATTGTTATTAAACCTACAAAAGAAG
AGCTGCAAAAACATAAAGAGTTTCTCAGTAGGATTTTAAAAACTGCTTAG

Upstream 100 bases:

>100_bases
CACAAGAAAGCAAAATAGCAAAAGCAGATTTTGCTATAAATAGCGGCGTTGATATGTTAGACTTGGAAAAACAAATAGCG
AAGCTAATAAAGGATTTGGA

Downstream 100 bases:

>100_bases
TAAAACGTCATTGCGAGGAGAGGCAAAGCCTCGACGTGGCAATCTCAGGAGTTTTATATTATTTCATGAGATTGCCACGT
TCCTTTTAATCGCTCGCAAT

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MSSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIHGISGEFLKDKPLFHTIADDF
LEFISDSKLIIHNAPFDIKFLNHELSLLKRTDIKLLELANTIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALK
DAALLAEVYVELMGGRQSAFKMVDKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA

Sequences:

>Translated_229_residues
MSSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIHGISGEFLKDKPLFHTIADDF
LEFISDSKLIIHNAPFDIKFLNHELSLLKRTDIKLLELANTIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALK
DAALLAEVYVELMGGRQSAFKMVDKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA
>Mature_228_residues
SSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIHGISGEFLKDKPLFHTIADDFL
EFISDSKLIIHNAPFDIKFLNHELSLLKRTDIKLLELANTIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKD
AALLAEVYVELMGGRQSAFKMVDKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786409, Length=228, Percent_Identity=46.0526315789474, Blast_Score=207, Evalue=6e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DPO3E_RICCN (Q92GL1)

Other databases:

- EMBL:   AE006914
- PIR:   H97838
- RefSeq:   NP_360749.1
- ProteinModelPortal:   Q92GL1
- SMR:   Q92GL1
- GeneID:   928107
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC1112
- NMPDR:   fig|272944.1.peg.1112
- OMA:   HGITNEF
- ProtClustDB:   PRK05711
- BioCyc:   RCON272944:RC1112-MONOMER
- BRENDA:   2.7.7.7
- GO:   GO:0005622
- InterPro:   IPR006054
- InterPro:   IPR006309
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337
- SMART:   SM00479
- TIGRFAMs:   TIGR00573
- TIGRFAMs:   TIGR01406

Pfam domain/function: PF00929 Exonuc_X-T; SSF53098 RNaseH_fold

EC number: =2.7.7.7

Molecular weight: Translated: 26054; Mature: 25922

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: ACT_SITE 156-156 BINDING 10-10 BINDING 12-12 BINDING 55-55 BINDING 60-60 BINDING 161-161

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIH
CCCHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCEEEEECCCCCCCCHHEEEE
GISGEFLKDKPLFHTIADDFLEFISDSKLIIHNAPFDIKFLNHELSLLKRTDIKLLELAN
CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHHCCHHHHHHHH
TIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELMGGRQSAF
HHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
KMVDKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA
HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSLREIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIH
CCHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCEEEEECCCCCCCCHHEEEE
GISGEFLKDKPLFHTIADDFLEFISDSKLIIHNAPFDIKFLNHELSLLKRTDIKLLELAN
CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHHCCHHHHHHHH
TIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELMGGRQSAF
HHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
KMVDKSAVINNLATNQVNNKTEQTTIVIKPTKEELQKHKEFLSRILKTA
HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893