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The map label for this gene is pat1

Identifier: 229586945

GI number: 229586945

Start: 875866

End: 877338

Strand: Direct

Name: pat1

Synonym: RAF_ORF0835

Alternate gene names: NA

Gene position: 875866-877338 (Clockwise)

Preceding gene: 229586943

Following gene: 229586951

Centisome position: 68.51

GC content: 31.91

Gene sequence:

>1473_bases
ATGGTAGATATAAACAACAATAAGATTAGCTTAGCACTATTTGAAGGCGGTGGAGTAAAAGGAAATATCCATTTAGAAAA
ATTAAAAATAATGGAGCAAATAACCGGTAAGCCTACTTGTGAGATATTCGATTTTACTGGAGGGACCAGTGTTGGAGGAC
TTATTTCTATTTTGCTTAATTTACCGAATCCTAATAATCCCGGGAAACCTTTATTCAGTGCAGCGCAAGCTCAAGAACTG
TTTGAAGAAATGGCACACGATATTTTTCCAGTAGGATTAACTTGTAGAAAATTGTGGAGTTTTAATGGCTTATTCAGCCA
TAAATTTTCTCCTGAACCATTAGTAAAATTATTGAAAGCATATTGTAAGGATTATACCCTCAAGGATTTAATCAGTGATG
TTGTAGTTACAGGTTATGATCTAAATAATAAACAAAATCCTCTTATGACCTTCTCTACTATAGATGCTAGACAAAGTGAA
GAGAATAATTATTACCTTTCAGATATAATACAAGGCATCACTGCAGCACCTGGATATTTCCCCAGCCACAATTTCCGTAA
TATAACCAATACTAAATCACATAAAATTATTGATGGTGGAGTATATGCTAATGACCCAACCTTACAAACATGGCAATTAT
TAAAAGAAAATAACTATAACATAGAAAACGTTTTGTATTTATCATTAAAAGAAGAAAATAATGATGATTACCAAACTGTT
TGTTGCGGCGGAGGCATGCTAGAACTAGTGAAAAATAATATGCCCGCTAAAATATTAGCAGCAACACAACAAGCTGATGA
ACAAACCGCTCAAAGCATTTTTGGTAATAAATTAATAGAAATAGCTACTTATATTCCAGAAAAATATGCTGAGATGAGTA
ATTCTAGTACTGAAAATCTGCAAGCACTAAAAGAATTTGCTAAAGAATCTATATATGGAAGCTCCACCTTTAGAAATATA
CCTTATAATGAAAAGTTTAAAGAAGCTATTGATAAAATAATAACTAATTATAATGTAAATAACCCTAACGACCAAATTGT
TATGAATGATTTTTACAAAGAGTTATTCCATATTAATACTTCTAATAACGCACTTGATAAAAGTTTTGAACAGGAAGAGG
ATATAGCAAACAACGAGGATGCAGTGAATACACCGATAGCTCAAGCTCTAGATTCTAAAGATATAGAACCTGAGAAAAAA
GAATTATTAGCAGGTATCAAGGAGTTTTTTAATCCATTCATCGAAAAAAATCCAGAAGCAAAAGTAGATCTAGAGAATTT
TTTACACGAAATAAAAAATTTGACATTAGCAGAAATTGAAAACAGTATTGTTACTTTTAAAGAAGCTAGATTAAAATGGC
AAGCAGAGCAGAATCACCTTGATGTATTTAGTAGCTGTAGTATGGAAGCCTTAAAAGAGGATATGACTCTTGAGGGTGAA
GAGCATACAGATGATGTACAAGGTTATCTCTAA

Upstream 100 bases:

>100_bases
TTAAATTTTGTTCAGTTTAGACTTTAGACAAATAAGTTTATTGACAAAAGTTAATTTTTATTGTATTATGCACCCTTAGT
ATTTTTTTTGAAAGGCAGTT

Downstream 100 bases:

>100_bases
CTTTCTTAATGTCATTCCCACGTAGGCGGGAATCCAGTCAAAAAAGTATAAATATGCTAGACTTTTAAAACTAAACGCTC
GATTTATCTCGCTTTACCTT

Product: Patatin-like phospholipase

Products: NA

Alternate protein names: Patatin-Like Phospholipase; Patatin Family Protein; Patatin-Like Protein; Phospholipase Patatin Family

Number of amino acids: Translated: 490; Mature: 490

Protein sequence:

>490_residues
MVDINNNKISLALFEGGGVKGNIHLEKLKIMEQITGKPTCEIFDFTGGTSVGGLISILLNLPNPNNPGKPLFSAAQAQEL
FEEMAHDIFPVGLTCRKLWSFNGLFSHKFSPEPLVKLLKAYCKDYTLKDLISDVVVTGYDLNNKQNPLMTFSTIDARQSE
ENNYYLSDIIQGITAAPGYFPSHNFRNITNTKSHKIIDGGVYANDPTLQTWQLLKENNYNIENVLYLSLKEENNDDYQTV
CCGGGMLELVKNNMPAKILAATQQADEQTAQSIFGNKLIEIATYIPEKYAEMSNSSTENLQALKEFAKESIYGSSTFRNI
PYNEKFKEAIDKIITNYNVNNPNDQIVMNDFYKELFHINTSNNALDKSFEQEEDIANNEDAVNTPIAQALDSKDIEPEKK
ELLAGIKEFFNPFIEKNPEAKVDLENFLHEIKNLTLAEIENSIVTFKEARLKWQAEQNHLDVFSSCSMEALKEDMTLEGE
EHTDDVQGYL

Sequences:

>Translated_490_residues
MVDINNNKISLALFEGGGVKGNIHLEKLKIMEQITGKPTCEIFDFTGGTSVGGLISILLNLPNPNNPGKPLFSAAQAQEL
FEEMAHDIFPVGLTCRKLWSFNGLFSHKFSPEPLVKLLKAYCKDYTLKDLISDVVVTGYDLNNKQNPLMTFSTIDARQSE
ENNYYLSDIIQGITAAPGYFPSHNFRNITNTKSHKIIDGGVYANDPTLQTWQLLKENNYNIENVLYLSLKEENNDDYQTV
CCGGGMLELVKNNMPAKILAATQQADEQTAQSIFGNKLIEIATYIPEKYAEMSNSSTENLQALKEFAKESIYGSSTFRNI
PYNEKFKEAIDKIITNYNVNNPNDQIVMNDFYKELFHINTSNNALDKSFEQEEDIANNEDAVNTPIAQALDSKDIEPEKK
ELLAGIKEFFNPFIEKNPEAKVDLENFLHEIKNLTLAEIENSIVTFKEARLKWQAEQNHLDVFSSCSMEALKEDMTLEGE
EHTDDVQGYL
>Mature_490_residues
MVDINNNKISLALFEGGGVKGNIHLEKLKIMEQITGKPTCEIFDFTGGTSVGGLISILLNLPNPNNPGKPLFSAAQAQEL
FEEMAHDIFPVGLTCRKLWSFNGLFSHKFSPEPLVKLLKAYCKDYTLKDLISDVVVTGYDLNNKQNPLMTFSTIDARQSE
ENNYYLSDIIQGITAAPGYFPSHNFRNITNTKSHKIIDGGVYANDPTLQTWQLLKENNYNIENVLYLSLKEENNDDYQTV
CCGGGMLELVKNNMPAKILAATQQADEQTAQSIFGNKLIEIATYIPEKYAEMSNSSTENLQALKEFAKESIYGSSTFRNI
PYNEKFKEAIDKIITNYNVNNPNDQIVMNDFYKELFHINTSNNALDKSFEQEEDIANNEDAVNTPIAQALDSKDIEPEKK
ELLAGIKEFFNPFIEKNPEAKVDLENFLHEIKNLTLAEIENSIVTFKEARLKWQAEQNHLDVFSSCSMEALKEDMTLEGE
EHTDDVQGYL

Specific function: Unknown

COG id: COG3621

COG function: function code R; Patatin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55290; Mature: 55290

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDINNNKISLALFEGGGVKGNIHLEKLKIMEQITGKPTCEIFDFTGGTSVGGLISILLN
CEECCCCEEEEEEEECCCCCCCEEHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHC
LPNPNNPGKPLFSAAQAQELFEEMAHDIFPVGLTCRKLWSFNGLFSHKFSPEPLVKLLKA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHH
YCKDYTLKDLISDVVVTGYDLNNKQNPLMTFSTIDARQSEENNYYLSDIIQGITAAPGYF
HHCCCCHHHHHHHHHEECCCCCCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHCCCCCC
PSHNFRNITNTKSHKIIDGGVYANDPTLQTWQLLKENNYNIENVLYLSLKEENNDDYQTV
CCCCCCCCCCCCCCEEEECCEECCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEE
CCGGGMLELVKNNMPAKILAATQQADEQTAQSIFGNKLIEIATYIPEKYAEMSNSSTENL
EECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
QALKEFAKESIYGSSTFRNIPYNEKFKEAIDKIITNYNVNNPNDQIVMNDFYKELFHINT
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHCCCC
SNNALDKSFEQEEDIANNEDAVNTPIAQALDSKDIEPEKKELLAGIKEFFNPFIEKNPEA
CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
KVDLENFLHEIKNLTLAEIENSIVTFKEARLKWQAEQNHLDVFSSCSMEALKEDMTLEGE
EECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHECCCCCHHHHHHHCCHHHHHHCCCCCCC
EHTDDVQGYL
CCCCHHCCCC
>Mature Secondary Structure
MVDINNNKISLALFEGGGVKGNIHLEKLKIMEQITGKPTCEIFDFTGGTSVGGLISILLN
CEECCCCEEEEEEEECCCCCCCEEHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHC
LPNPNNPGKPLFSAAQAQELFEEMAHDIFPVGLTCRKLWSFNGLFSHKFSPEPLVKLLKA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHH
YCKDYTLKDLISDVVVTGYDLNNKQNPLMTFSTIDARQSEENNYYLSDIIQGITAAPGYF
HHCCCCHHHHHHHHHEECCCCCCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHCCCCCC
PSHNFRNITNTKSHKIIDGGVYANDPTLQTWQLLKENNYNIENVLYLSLKEENNDDYQTV
CCCCCCCCCCCCCCEEEECCEECCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEE
CCGGGMLELVKNNMPAKILAATQQADEQTAQSIFGNKLIEIATYIPEKYAEMSNSSTENL
EECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
QALKEFAKESIYGSSTFRNIPYNEKFKEAIDKIITNYNVNNPNDQIVMNDFYKELFHINT
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHCCCC
SNNALDKSFEQEEDIANNEDAVNTPIAQALDSKDIEPEKKELLAGIKEFFNPFIEKNPEA
CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
KVDLENFLHEIKNLTLAEIENSIVTFKEARLKWQAEQNHLDVFSSCSMEALKEDMTLEGE
EECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHECCCCCHHHHHHHCCHHHHHHCCCCCCC
EHTDDVQGYL
CCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA