Click here to switch to the map view.

The map label for this gene is 229586925

Identifier: 229586925

GI number: 229586925

Start: 850408

End: 851028

Strand: Direct

Name: 229586925

Synonym: RAF_ORF0811

Alternate gene names: NA

Gene position: 850408-851028 (Clockwise)

Preceding gene: 229586924

Following gene: 229586926

Centisome position: 66.51

GC content: 30.92

Gene sequence:

>621_bases
ATGAAAATACAGTCAAATGTTATAAAAATAATTATCGTAATTAGCTTATTAATAATAGGAGTAGGAGCATTATATTTGTT
GTTATCTTTAAGAACGCCTGAAAAGCCACTTGCCGGTCAAGTTAATATCTATGAAGATAACGTAAAAATCGGCGGTGACT
TTGAACTAATAGACCAAAATGGAGAGATATTTAATAGTGATAAGTTGAAAGGCAACTTAAGCCTCATTTACTTTGGATTT
ACTAGTTGTCCTGATATATGCCCAACCTCTCTAAATAAAATGACGGAGATTGTAGAAATTTTAAATAAACATAAAATAGA
TATTCTACCTGTTTTTATCACTATTGACCCAAAACGTGATACTCCTATAGCACTTAAAGAATATCTAAAACATTTTCATC
CGAAATTTATAGGTCTTACCGGTAACGAGCAGCAAATAAAAGATGTAACTGATAAATTCAAGGTTTTCTATGCTCGTGTG
CATGGTGATGATGACGACCCGAACTATATGCTTGATCATTCATCTTTTACATATTTAATCGATGCAAACGGAAAATATCT
GAAACATTTCTATTTAGATTCTTCACCTAAGGAAATGATGGAATTTTTAAGAAATGAATAA

Upstream 100 bases:

>100_bases
ACATTTTCACTTTTCTCTGGATTCCTGCTTTCGCAGGAATGACATAAGAGCCATACAGCAAGACCAGCTAGGATGACAAC
GCAAAAATGGATAATATCTT

Downstream 100 bases:

>100_bases
TTATATATCGGTAGCGTATTTATTTACCTTTTTAACCTTAGCGACATTGTTAATTGTAAGTTTTTTAAATTACAAGTCAT
TGAAAAATAAACAGAACTTT

Product: Sco2 protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKIQSNVIKIIIVISLLIIGVGALYLLLSLRTPEKPLAGQVNIYEDNVKIGGDFELIDQNGEIFNSDKLKGNLSLIYFGF
TSCPDICPTSLNKMTEIVEILNKHKIDILPVFITIDPKRDTPIALKEYLKHFHPKFIGLTGNEQQIKDVTDKFKVFYARV
HGDDDDPNYMLDHSSFTYLIDANGKYLKHFYLDSSPKEMMEFLRNE

Sequences:

>Translated_206_residues
MKIQSNVIKIIIVISLLIIGVGALYLLLSLRTPEKPLAGQVNIYEDNVKIGGDFELIDQNGEIFNSDKLKGNLSLIYFGF
TSCPDICPTSLNKMTEIVEILNKHKIDILPVFITIDPKRDTPIALKEYLKHFHPKFIGLTGNEQQIKDVTDKFKVFYARV
HGDDDDPNYMLDHSSFTYLIDANGKYLKHFYLDSSPKEMMEFLRNE
>Mature_206_residues
MKIQSNVIKIIIVISLLIIGVGALYLLLSLRTPEKPLAGQVNIYEDNVKIGGDFELIDQNGEIFNSDKLKGNLSLIYFGF
TSCPDICPTSLNKMTEIVEILNKHKIDILPVFITIDPKRDTPIALKEYLKHFHPKFIGLTGNEQQIKDVTDKFKVFYARV
HGDDDDPNYMLDHSSFTYLIDANGKYLKHFYLDSSPKEMMEFLRNE

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=183, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI281182722, Length=183, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI281182716, Length=183, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI153791313, Length=183, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI4759068, Length=143, Percent_Identity=39.8601398601399, Blast_Score=121, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17531419, Length=209, Percent_Identity=33.9712918660287, Blast_Score=134, Evalue=3e-32,
Organism=Saccharomyces cerevisiae, GI6319498, Length=205, Percent_Identity=40, Blast_Score=148, Evalue=7e-37,
Organism=Saccharomyces cerevisiae, GI6319511, Length=177, Percent_Identity=36.7231638418079, Blast_Score=127, Evalue=1e-30,
Organism=Drosophila melanogaster, GI19920710, Length=183, Percent_Identity=34.4262295081967, Blast_Score=129, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23574; Mature: 23574

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIQSNVIKIIIVISLLIIGVGALYLLLSLRTPEKPLAGQVNIYEDNVKIGGDFELIDQN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEECCCEEEEECC
GEIFNSDKLKGNLSLIYFGFTSCPDICPTSLNKMTEIVEILNKHKIDILPVFITIDPKRD
CCEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCC
TPIALKEYLKHFHPKFIGLTGNEQQIKDVTDKFKVFYARVHGDDDDPNYMLDHSSFTYLI
CCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHEEEEEEECCCCCCCEEEECCCEEEEE
DANGKYLKHFYLDSSPKEMMEFLRNE
ECCCCEEEEEEECCCHHHHHHHHHCC
>Mature Secondary Structure
MKIQSNVIKIIIVISLLIIGVGALYLLLSLRTPEKPLAGQVNIYEDNVKIGGDFELIDQN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEECCCEEEEECC
GEIFNSDKLKGNLSLIYFGFTSCPDICPTSLNKMTEIVEILNKHKIDILPVFITIDPKRD
CCEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCC
TPIALKEYLKHFHPKFIGLTGNEQQIKDVTDKFKVFYARVHGDDDDPNYMLDHSSFTYLI
CCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHEEEEEEECCCCCCCEEEECCCEEEEE
DANGKYLKHFYLDSSPKEMMEFLRNE
ECCCCEEEEEEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]