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The map label for this gene is ampD1

Identifier: 229586632

GI number: 229586632

Start: 491698

End: 492501

Strand: Direct

Name: ampD1

Synonym: RAF_ORF0464

Alternate gene names: NA

Gene position: 491698-492501 (Clockwise)

Preceding gene: 229586631

Following gene: 229586633

Centisome position: 38.46

GC content: 35.32

Gene sequence:

>804_bases
ATGAGTAAAAGTAAGGCTATTGAAAATAACGGTATTAGTAATACCAATAGTCCAAATGGTAAATATATGGCCCCAAGACC
GGAAGGAGTAAAACCTACCTGTGTAGTAATTACTTATTCTGTAAGCAAGGATATTAAGGCTGTTCGTGAAGTATTGGATG
AGCGAGGTGCAAGTGTTCATTACATAATTGATAAGGATGGGACTCAAAAAGGATATCATAATGATTTAACAGATCAAGCT
TTTTATGCAGGCAAGAGTAGTTGGAAAGGAGAAGTAGGTGTTAATAAGTTTGGTATTGGAGTCATGCTTATTAATGATGC
AAAAAGTGATTTTCCTGCAGAGCAAATAGGGAAATTAAAAGAATTTCTTAAGGATGTAACAGAAAGATATCCAAATTTAG
ATTTAAAACATGATTTAGTCGGTCTTGGTGAAGTAACTGTAAACCGAGAAGGCAATGCTCATATAGCTCCTGGATCAAAA
TTTCCTTGGAAAGAATTAGCTGCAGCTGGTTTTGGTAGATATTTTGAGACTACGCAAGAGCAAAAGAGTAAATTATTATT
AAGTCTTGATAGTACTGGAGAAAAAGTTAATACTTTACAGGAAAATTTAAAAGAATATGGCTATGGAGTGGAATCCACAA
GTACATTTGATCAATTTACTCAGCAAGCAGTGAGAGTATTTAATGATCGTTATGGTACAGGTTTACCAAACGAAGAGCCA
CCTGTAAGTTGGACTGAAGCAGGTCAAGATGTTCTATCGCAATTACTAGGGCAAACGGTATTAGCACAAACAGAAAATGC
ATAG

Upstream 100 bases:

>100_bases
TTAAATTTTCATTGACTTAGCATTACCAAAGTATTAATTTTCGTTAAGGTTTAGTAAATTCTGAACCGTCAACAATTATT
AAATATATTGGAGGAAGGTT

Downstream 100 bases:

>100_bases
TTTAAGAAATGAATTCCTTTTTCATTTTGCAAGCCTTGTTGCATGGGTACTGAATCGTCATTAAAAGGATTAATGGCTTG
TTTAGGTCATTCCTGCGTGG

Product: Negative regulator of beta-lactamase expression

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSKSKAIENNGISNTNSPNGKYMAPRPEGVKPTCVVITYSVSKDIKAVREVLDERGASVHYIIDKDGTQKGYHNDLTDQA
FYAGKSSWKGEVGVNKFGIGVMLINDAKSDFPAEQIGKLKEFLKDVTERYPNLDLKHDLVGLGEVTVNREGNAHIAPGSK
FPWKELAAAGFGRYFETTQEQKSKLLLSLDSTGEKVNTLQENLKEYGYGVESTSTFDQFTQQAVRVFNDRYGTGLPNEEP
PVSWTEAGQDVLSQLLGQTVLAQTENA

Sequences:

>Translated_267_residues
MSKSKAIENNGISNTNSPNGKYMAPRPEGVKPTCVVITYSVSKDIKAVREVLDERGASVHYIIDKDGTQKGYHNDLTDQA
FYAGKSSWKGEVGVNKFGIGVMLINDAKSDFPAEQIGKLKEFLKDVTERYPNLDLKHDLVGLGEVTVNREGNAHIAPGSK
FPWKELAAAGFGRYFETTQEQKSKLLLSLDSTGEKVNTLQENLKEYGYGVESTSTFDQFTQQAVRVFNDRYGTGLPNEEP
PVSWTEAGQDVLSQLLGQTVLAQTENA
>Mature_266_residues
SKSKAIENNGISNTNSPNGKYMAPRPEGVKPTCVVITYSVSKDIKAVREVLDERGASVHYIIDKDGTQKGYHNDLTDQAF
YAGKSSWKGEVGVNKFGIGVMLINDAKSDFPAEQIGKLKEFLKDVTERYPNLDLKHDLVGLGEVTVNREGNAHIAPGSKF
PWKELAAAGFGRYFETTQEQKSKLLLSLDSTGEKVNTLQENLKEYGYGVESTSTFDQFTQQAVRVFNDRYGTGLPNEEPP
VSWTEAGQDVLSQLLGQTVLAQTENA

Specific function: Unknown

COG id: COG3023

COG function: function code V; Negative regulator of beta-lactamase expression

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002502
- InterPro:   IPR002477 [H]

Pfam domain/function: PF01510 Amidase_2; PF01471 PG_binding_1 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 29404; Mature: 29273

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSKAIENNGISNTNSPNGKYMAPRPEGVKPTCVVITYSVSKDIKAVREVLDERGASVH
CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEE
YIIDKDGTQKGYHNDLTDQAFYAGKSSWKGEVGVNKFGIGVMLINDAKSDFPAEQIGKLK
EEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEECEEEEEEECCCCCCCHHHHHHHH
EFLKDVTERYPNLDLKHDLVGLGEVTVNREGNAHIAPGSKFPWKELAAAGFGRYFETTQE
HHHHHHHHHCCCCCCCHHHEECCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHH
QKSKLLLSLDSTGEKVNTLQENLKEYGYGVESTSTFDQFTQQAVRVFNDRYGTGLPNEEP
HHHHEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
PVSWTEAGQDVLSQLLGQTVLAQTENA
CCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKSKAIENNGISNTNSPNGKYMAPRPEGVKPTCVVITYSVSKDIKAVREVLDERGASVH
CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEE
YIIDKDGTQKGYHNDLTDQAFYAGKSSWKGEVGVNKFGIGVMLINDAKSDFPAEQIGKLK
EEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEECEEEEEEECCCCCCCHHHHHHHH
EFLKDVTERYPNLDLKHDLVGLGEVTVNREGNAHIAPGSKFPWKELAAAGFGRYFETTQE
HHHHHHHHHCCCCCCCHHHEECCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHH
QKSKLLLSLDSTGEKVNTLQENLKEYGYGVESTSTFDQFTQQAVRVFNDRYGTGLPNEEP
HHHHEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
PVSWTEAGQDVLSQLLGQTVLAQTENA
CCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]