Definition Rickettsia africae ESF-5 chromosome, complete genome.
Accession NC_012633
Length 1,278,540

Click here to switch to the map view.

The map label for this gene is 229586503

Identifier: 229586503

GI number: 229586503

Start: 341251

End: 342321

Strand: Direct

Name: 229586503

Synonym: RAF_ORF0315

Alternate gene names: NA

Gene position: 341251-342321 (Clockwise)

Preceding gene: 229586500

Following gene: 229586506

Centisome position: 26.69

GC content: 28.01

Gene sequence:

>1071_bases
ATGTCAAAAAAATCAAGGGTTAGAAAAATATTTAATAAGTTAAAATCTTATTGGACTAGTTTTAGACAAAGTAAAATCGG
TAAAATATTATTTAGCAATAGTTTAAGTTATGCAGTTTCCATAGCTTCTATAGCAATTACAGTTTCTGGACTTTTTACTC
CTATATCACCGATAATTATAGCTGTAGCTGTTGTTTCAGGAGTTAGCGTAGGAATTCAAGCTGTAAATGAGACTTTGAAA
GTGCATGATTTGCGTAAACTTCATAAAGAGAATAATTTATTAGTACATAACAGAAATGCTAAAAGTCAGCAAGATTATAT
ATTATCATTAGAACCGAGCTTAAAAGATATTTTGAAAAATGAATTATATACGCCGCAAACGGCAGGTAAGGAGGCTACTC
AAGATAAGTATGAGTTAAATGTAAATAAATTGCAAAGTACAGGACGAATATTTGGCAATAATTTAGGTGGAGCCGCAAAT
TGGGCCGCTTCTATTATTAAAGGTGCGAGCGGTAATGTGCTTGATATATTAAAAGCTACGGGTTACGGTGTAGTTACGAC
CGCATCATTAATTATCGACGGTCTTACTGAAAAGGAAAAAATAGAAATAAAAGCAATATTTAAATTAAATATAAATGAAG
AATATAAAAAACAAGATACTCCTATATATAAAAATTTAGAACAATTAGAGAATTATACTAAGAATCAAGTATTGCAAACA
TTAGCTTTAAAAAAATTAATAACGGATAAGAATTATTGGAGTATGAATAAAGACCAAACAATACAAAAATTTCGAGAAAT
AATAGGCAGTTTTAATTCTGAAATAAAAAGAAACGGTTTAGAAGAATTTTTTAGAGAAAATAAAATAACAATGGATAATA
GCAAAGAGAGCTATGTTAAAGATATTAAAAATGTAATGAATCCATTTTATGAAAATCCTAATAAAGCCGAAGGATATAAT
CCTTTAACTAAAGCTATGGATAAAGATAAAGTTAATAATGCTGAAATAAAAACGACAAAAAGTGCAAATTTAAAAAGGAT
GCAAAAAAGAAAGCGAAATTTAACAATATGA

Upstream 100 bases:

>100_bases
TTTATTAGAGTTTATACTATAATTTCAGTTGTAAGAGAAGTTAATTAAATAAATAAAAGAAAAATTTATAAAAATATTTG
TTCTTTGGAGAGAAAAATAA

Downstream 100 bases:

>100_bases
AATGATTATTATAACTCACTGCTAGTTACAAATTTGTAAGAGGTAGTATCGCTAAATATTCTATGCAATAGTTCATTATT
AAGAGCATGGCTAGTTTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MSKKSRVRKIFNKLKSYWTSFRQSKIGKILFSNSLSYAVSIASIAITVSGLFTPISPIIIAVAVVSGVSVGIQAVNETLK
VHDLRKLHKENNLLVHNRNAKSQQDYILSLEPSLKDILKNELYTPQTAGKEATQDKYELNVNKLQSTGRIFGNNLGGAAN
WAASIIKGASGNVLDILKATGYGVVTTASLIIDGLTEKEKIEIKAIFKLNINEEYKKQDTPIYKNLEQLENYTKNQVLQT
LALKKLITDKNYWSMNKDQTIQKFREIIGSFNSEIKRNGLEEFFRENKITMDNSKESYVKDIKNVMNPFYENPNKAEGYN
PLTKAMDKDKVNNAEIKTTKSANLKRMQKRKRNLTI

Sequences:

>Translated_356_residues
MSKKSRVRKIFNKLKSYWTSFRQSKIGKILFSNSLSYAVSIASIAITVSGLFTPISPIIIAVAVVSGVSVGIQAVNETLK
VHDLRKLHKENNLLVHNRNAKSQQDYILSLEPSLKDILKNELYTPQTAGKEATQDKYELNVNKLQSTGRIFGNNLGGAAN
WAASIIKGASGNVLDILKATGYGVVTTASLIIDGLTEKEKIEIKAIFKLNINEEYKKQDTPIYKNLEQLENYTKNQVLQT
LALKKLITDKNYWSMNKDQTIQKFREIIGSFNSEIKRNGLEEFFRENKITMDNSKESYVKDIKNVMNPFYENPNKAEGYN
PLTKAMDKDKVNNAEIKTTKSANLKRMQKRKRNLTI
>Mature_355_residues
SKKSRVRKIFNKLKSYWTSFRQSKIGKILFSNSLSYAVSIASIAITVSGLFTPISPIIIAVAVVSGVSVGIQAVNETLKV
HDLRKLHKENNLLVHNRNAKSQQDYILSLEPSLKDILKNELYTPQTAGKEATQDKYELNVNKLQSTGRIFGNNLGGAANW
AASIIKGASGNVLDILKATGYGVVTTASLIIDGLTEKEKIEIKAIFKLNINEEYKKQDTPIYKNLEQLENYTKNQVLQTL
ALKKLITDKNYWSMNKDQTIQKFREIIGSFNSEIKRNGLEEFFRENKITMDNSKESYVKDIKNVMNPFYENPNKAEGYNP
LTKAMDKDKVNNAEIKTTKSANLKRMQKRKRNLTI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40293; Mature: 40162

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKSRVRKIFNKLKSYWTSFRQSKIGKILFSNSLSYAVSIASIAITVSGLFTPISPIII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAVVSGVSVGIQAVNETLKVHDLRKLHKENNLLVHNRNAKSQQDYILSLEPSLKDILKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECHHHHHHHHH
ELYTPQTAGKEATQDKYELNVNKLQSTGRIFGNNLGGAANWAASIIKGASGNVLDILKAT
HCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHC
GYGVVTTASLIIDGLTEKEKIEIKAIFKLNINEEYKKQDTPIYKNLEQLENYTKNQVLQT
CCCHHHHHHHHHHCCCCCHHEEEEEEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LALKKLITDKNYWSMNKDQTIQKFREIIGSFNSEIKRNGLEEFFRENKITMDNSKESYVK
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
DIKNVMNPFYENPNKAEGYNPLTKAMDKDKVNNAEIKTTKSANLKRMQKRKRNLTI
HHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKKSRVRKIFNKLKSYWTSFRQSKIGKILFSNSLSYAVSIASIAITVSGLFTPISPIII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAVVSGVSVGIQAVNETLKVHDLRKLHKENNLLVHNRNAKSQQDYILSLEPSLKDILKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECHHHHHHHHH
ELYTPQTAGKEATQDKYELNVNKLQSTGRIFGNNLGGAANWAASIIKGASGNVLDILKAT
HCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHC
GYGVVTTASLIIDGLTEKEKIEIKAIFKLNINEEYKKQDTPIYKNLEQLENYTKNQVLQT
CCCHHHHHHHHHHCCCCCHHEEEEEEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LALKKLITDKNYWSMNKDQTIQKFREIIGSFNSEIKRNGLEEFFRENKITMDNSKESYVK
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
DIKNVMNPFYENPNKAEGYNPLTKAMDKDKVNNAEIKTTKSANLKRMQKRKRNLTI
HHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA