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The map label for this gene is cydB [H]

Identifier: 229586461

GI number: 229586461

Start: 295940

End: 296959

Strand: Direct

Name: cydB [H]

Synonym: RAF_ORF0269

Alternate gene names: 229586461

Gene position: 295940-296959 (Clockwise)

Preceding gene: 229586460

Following gene: 229586462

Centisome position: 23.15

GC content: 36.18

Gene sequence:

>1020_bases
ATGTTAAATTTTGCACCTTATATAGATTTACCGCTTGTTTGGGGTGGGCTTATAGCTACCGCTATTTGTTTATATGTTTT
ATTAGACGGTTTTGATTTAGGAGTAGGAATCTTATTTCCGTTTGCACCTACCGATGATTGCCGTCATAAAATGATCAATT
CTATTGCGCCTTTTTGGGACGGTAACGAAACTTGGTTAGTACTTGGCGGCGGTGGTTTATTTGCGGCTTTTCCGTTGGCG
TATTCGCTATTAATGCCGGCTTTATATATTCCTATTATATTGATGTTACTCGGTCTAATATTTCGTGGTGTAGCTTTTGA
ATTCCGTTTTAAGGCTCATATAGGTCATCGTTATATTTGGGACTACGCTTTTCATTTTGGTTCTATGATTACTGTTTTTT
GTCAAGGTTTAATGCTTGGTACGTTTGTCCAAGGAATAGAGATAGAAGGACGAGAATTTGCAGGAGGGAGCTTTGATTTT
CTTACTCCCTTTTCCGTTATGACGGGGATAGCATTAATATTCGGTTATGCACTCTTGGGTGCTACTTGGCTTATTCTGAA
AACAGAAAAGACAACACAAGATTGGGCTTATAAATCTGCTTTATATATTTTATTTTACGTTGCACTTTTTATGGGGCTTG
TAAGCTTATGGGTTCCTTTCTTAAATAACCACATAAATCATCGTTGGTTTAGTGTACCTAATATTTACTATTTATCTATT
GTACCTATTGTAACTGCTTTAATATTTATCAAGTTAATTAAAGCCGTTAAGCAGAAAAAAGAAGTAAAGCCGTTTATTTA
TACGATCTTGTTATTTTTATTAGGATATTTAGGGCTCGCGATAAGCATATGGCCATATATCGTTCCTTATAAAGTTACGC
TTGAAACTGCTGCAGCAGCACCGGAGTCACAGTCTTTACTGTTGATAGGGGCTGGGATATTCCTACCTGTCATACTTGGC
TACACATTCTATTGTTATTATATATTTCGTGGCAAATCATCTCATCATCCGATATATTAA

Upstream 100 bases:

>100_bases
ATAATGCATTTGATAAAGAAAGGTATAGAAGTGATAGAGAATAAAGAAATGTACGGAGAGAGTGGTTTGAATAACCCATT
AGTAGAAAAGTAATAAGCTT

Downstream 100 bases:

>100_bases
AAAATTTAAAAAAATAACCTCTTGTCTCAAAGGGTGGCAATGGTTTATTATCCTATGGCTTAGCGGATTATTATCCACAT
TACTTTTAACTTATGTAGTT

Product: Cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MLNFAPYIDLPLVWGGLIATAICLYVLLDGFDLGVGILFPFAPTDDCRHKMINSIAPFWDGNETWLVLGGGGLFAAFPLA
YSLLMPALYIPIILMLLGLIFRGVAFEFRFKAHIGHRYIWDYAFHFGSMITVFCQGLMLGTFVQGIEIEGREFAGGSFDF
LTPFSVMTGIALIFGYALLGATWLILKTEKTTQDWAYKSALYILFYVALFMGLVSLWVPFLNNHINHRWFSVPNIYYLSI
VPIVTALIFIKLIKAVKQKKEVKPFIYTILLFLLGYLGLAISIWPYIVPYKVTLETAAAAPESQSLLLIGAGIFLPVILG
YTFYCYYIFRGKSSHHPIY

Sequences:

>Translated_339_residues
MLNFAPYIDLPLVWGGLIATAICLYVLLDGFDLGVGILFPFAPTDDCRHKMINSIAPFWDGNETWLVLGGGGLFAAFPLA
YSLLMPALYIPIILMLLGLIFRGVAFEFRFKAHIGHRYIWDYAFHFGSMITVFCQGLMLGTFVQGIEIEGREFAGGSFDF
LTPFSVMTGIALIFGYALLGATWLILKTEKTTQDWAYKSALYILFYVALFMGLVSLWVPFLNNHINHRWFSVPNIYYLSI
VPIVTALIFIKLIKAVKQKKEVKPFIYTILLFLLGYLGLAISIWPYIVPYKVTLETAAAAPESQSLLLIGAGIFLPVILG
YTFYCYYIFRGKSSHHPIY
>Mature_339_residues
MLNFAPYIDLPLVWGGLIATAICLYVLLDGFDLGVGILFPFAPTDDCRHKMINSIAPFWDGNETWLVLGGGGLFAAFPLA
YSLLMPALYIPIILMLLGLIFRGVAFEFRFKAHIGHRYIWDYAFHFGSMITVFCQGLMLGTFVQGIEIEGREFAGGSFDF
LTPFSVMTGIALIFGYALLGATWLILKTEKTTQDWAYKSALYILFYVALFMGLVSLWVPFLNNHINHRWFSVPNIYYLSI
VPIVTALIFIKLIKAVKQKKEVKPFIYTILLFLLGYLGLAISIWPYIVPYKVTLETAAAAPESQSLLLIGAGIFLPVILG
YTFYCYYIFRGKSSHHPIY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=368, Percent_Identity=26.3586956521739, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1787213, Length=370, Percent_Identity=27.8378378378378, Blast_Score=122, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 38210; Mature: 38210

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNFAPYIDLPLVWGGLIATAICLYVLLDGFDLGVGILFPFAPTDDCRHKMINSIAPFWD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHHCCCCC
GNETWLVLGGGGLFAAFPLAYSLLMPALYIPIILMLLGLIFRGVAFEFRFKAHIGHRYIW
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCHHHHH
DYAFHFGSMITVFCQGLMLGTFVQGIEIEGREFAGGSFDFLTPFSVMTGIALIFGYALLG
HHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ATWLILKTEKTTQDWAYKSALYILFYVALFMGLVSLWVPFLNNHINHRWFSVPNIYYLSI
HEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHH
VPIVTALIFIKLIKAVKQKKEVKPFIYTILLFLLGYLGLAISIWPYIVPYKVTLETAAAA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHCC
PESQSLLLIGAGIFLPVILGYTFYCYYIFRGKSSHHPIY
CCCCCEEEEECHHHHHHHHHHHHHHHHEEECCCCCCCCC
>Mature Secondary Structure
MLNFAPYIDLPLVWGGLIATAICLYVLLDGFDLGVGILFPFAPTDDCRHKMINSIAPFWD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHHCCCCC
GNETWLVLGGGGLFAAFPLAYSLLMPALYIPIILMLLGLIFRGVAFEFRFKAHIGHRYIW
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCHHHHH
DYAFHFGSMITVFCQGLMLGTFVQGIEIEGREFAGGSFDFLTPFSVMTGIALIFGYALLG
HHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ATWLILKTEKTTQDWAYKSALYILFYVALFMGLVSLWVPFLNNHINHRWFSVPNIYYLSI
HEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHH
VPIVTALIFIKLIKAVKQKKEVKPFIYTILLFLLGYLGLAISIWPYIVPYKVTLETAAAA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHCC
PESQSLLLIGAGIFLPVILGYTFYCYYIFRGKSSHHPIY
CCCCCEEEEECHHHHHHHHHHHHHHHHEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]