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The map label for this gene is cydA [H]

Identifier: 229586460

GI number: 229586460

Start: 294562

End: 295932

Strand: Direct

Name: cydA [H]

Synonym: RAF_ORF0268

Alternate gene names: 229586460

Gene position: 294562-295932 (Clockwise)

Preceding gene: 229586459

Following gene: 229586461

Centisome position: 23.04

GC content: 34.65

Gene sequence:

>1371_bases
ATGGAATTTGATCAAGGATTATTATCAAGGATTCAATTTGCTTTTACCATAAGTTTTCATATAATATTCCCTGCTTTTAC
TATAGGGCTTGCAAGCTTTTTAGCGGTAATTGAAGGGTTATGGTTGAAAACAAAAAAGCTGGTTTATCAAGAAATATACA
AATTTTGGGTGAAGATTTTTGCCGTTACTTTCGGTATGGGAGTAGTTTCGGGTGTTGTAATGTCTTATCAATTCGGTACT
AACTGGTCGAATTTTTCAGATAAGGTTGGAAATGTCCTTGGTCCGCTTCTCGGTTTTGAAGTATTTACTGCCTTTTTCCT
TGAATCTTCTTTTTTAGGTATAATGTTATTCGGCTTTAATAAAGTCAGTAAAAAAGTACATTTTATTTCTACGTTAATAG
TTGCCGTTGGTACTGTAATCTCAGCTTTTTGGATACTTGCAGCTAGTAGCTGGATGCATACGCCTGCTGGTTTTGAACTG
CGAGGCGAAGGATTCTTTTATCCTTTAAATTGGCTAGAAATTATCTTTAACCCTTCTTTCCCATATCGCTTTTTCCATAT
GATTACGGCGGCTTATTTAACTACTTCTTTTGTTATCGGTGGTGTAGCTAGCTTTTATTTACTAAATAATCGTTATAAAG
AGCATGCTAAAATTATGCTTTTTATGGCGGTGTTAATGGCGTTAATCGTTGCACCTATTCAAATAGTTATTGGTGATCTG
CATGGTTTAAATACTCTTAAATATCAGCCGGTCAAGGTCTCGGCTATGGAAGGTATTTGGAATACAGACAAAGGAGTAGC
TTTTAATCTTATCGGCTTTCCTGATGGGGAAGAAGAAAAAACAAAATATGCTGTAGAAATACCTTATGCTAGTAGTTTAA
TCTTAACGCATAGTTTAGATGGTGAAGTGAAAGGATTAAAAGAATGGACAAAAGAAGAGCGTCCGCCGGTTGCAGTAGTA
TTTTTTAGCTTTCGTATTATGGTAGGAATCGGTTGCTTAATGGTATTTATAGGTATTGTGGGGTTATATCTTTACTTGAA
GAAAAGATTATATACTACGCATTGGTTTCAATATTGGTATATATTAATGTCACCTTCAGGTTTTATTGCAGTACTTGCCG
GTTGGTTCGTAACCGAGGTAGGTAGACAACCTTATATAGTATATAATATTTTAAAAACCGTGGATACGGTATCACCGGTA
CTCGGCAAATATGTATTTATTTCTCTAATTGCTTTTATAGTAGTGTATGTGATCATTTTCGGAGCGGGTATATATTATAT
AATGCATTTGATAAAGAAAGGTATAGAAGTGATAGAGAATAAAGAAATGTACGGAGAGAGTGGTTTGAATAACCCATTAG
TAGAAAAGTAA

Upstream 100 bases:

>100_bases
CTATAAGTACTGTGGTACTCACGTATTAAGTATACGTTATTACACTGGGAGTATATTGTTATTGTCACAAAGCTTATTAT
CTTAAAACAGCAGCTTAAAT

Downstream 100 bases:

>100_bases
TAAGCTTATGTTAAATTTTGCACCTTATATAGATTTACCGCTTGTTTGGGGTGGGCTTATAGCTACCGCTATTTGTTTAT
ATGTTTTATTAGACGGTTTT

Product: Cytochrome d ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MEFDQGLLSRIQFAFTISFHIIFPAFTIGLASFLAVIEGLWLKTKKLVYQEIYKFWVKIFAVTFGMGVVSGVVMSYQFGT
NWSNFSDKVGNVLGPLLGFEVFTAFFLESSFLGIMLFGFNKVSKKVHFISTLIVAVGTVISAFWILAASSWMHTPAGFEL
RGEGFFYPLNWLEIIFNPSFPYRFFHMITAAYLTTSFVIGGVASFYLLNNRYKEHAKIMLFMAVLMALIVAPIQIVIGDL
HGLNTLKYQPVKVSAMEGIWNTDKGVAFNLIGFPDGEEEKTKYAVEIPYASSLILTHSLDGEVKGLKEWTKEERPPVAVV
FFSFRIMVGIGCLMVFIGIVGLYLYLKKRLYTTHWFQYWYILMSPSGFIAVLAGWFVTEVGRQPYIVYNILKTVDTVSPV
LGKYVFISLIAFIVVYVIIFGAGIYYIMHLIKKGIEVIENKEMYGESGLNNPLVEK

Sequences:

>Translated_456_residues
MEFDQGLLSRIQFAFTISFHIIFPAFTIGLASFLAVIEGLWLKTKKLVYQEIYKFWVKIFAVTFGMGVVSGVVMSYQFGT
NWSNFSDKVGNVLGPLLGFEVFTAFFLESSFLGIMLFGFNKVSKKVHFISTLIVAVGTVISAFWILAASSWMHTPAGFEL
RGEGFFYPLNWLEIIFNPSFPYRFFHMITAAYLTTSFVIGGVASFYLLNNRYKEHAKIMLFMAVLMALIVAPIQIVIGDL
HGLNTLKYQPVKVSAMEGIWNTDKGVAFNLIGFPDGEEEKTKYAVEIPYASSLILTHSLDGEVKGLKEWTKEERPPVAVV
FFSFRIMVGIGCLMVFIGIVGLYLYLKKRLYTTHWFQYWYILMSPSGFIAVLAGWFVTEVGRQPYIVYNILKTVDTVSPV
LGKYVFISLIAFIVVYVIIFGAGIYYIMHLIKKGIEVIENKEMYGESGLNNPLVEK
>Mature_456_residues
MEFDQGLLSRIQFAFTISFHIIFPAFTIGLASFLAVIEGLWLKTKKLVYQEIYKFWVKIFAVTFGMGVVSGVVMSYQFGT
NWSNFSDKVGNVLGPLLGFEVFTAFFLESSFLGIMLFGFNKVSKKVHFISTLIVAVGTVISAFWILAASSWMHTPAGFEL
RGEGFFYPLNWLEIIFNPSFPYRFFHMITAAYLTTSFVIGGVASFYLLNNRYKEHAKIMLFMAVLMALIVAPIQIVIGDL
HGLNTLKYQPVKVSAMEGIWNTDKGVAFNLIGFPDGEEEKTKYAVEIPYASSLILTHSLDGEVKGLKEWTKEERPPVAVV
FFSFRIMVGIGCLMVFIGIVGLYLYLKKRLYTTHWFQYWYILMSPSGFIAVLAGWFVTEVGRQPYIVYNILKTVDTVSPV
LGKYVFISLIAFIVVYVIIFGAGIYYIMHLIKKGIEVIENKEMYGESGLNNPLVEK

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=311, Percent_Identity=38.2636655948553, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI1787212, Length=310, Percent_Identity=35.8064516129032, Blast_Score=217, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 51611; Mature: 51611

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCC
>Mature Secondary Structure
MEFDQGLLSRIQFAFTISFHIIFPAFTIGLASFLAVIEGLWLKTKKLVYQEIYKFWVKIF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVTFGMGVVSGVVMSYQFGTNWSNFSDKVGNVLGPLLGFEVFTAFFLESSFLGIMLFGFN
HHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
KVSKKVHFISTLIVAVGTVISAFWILAASSWMHTPAGFELRGEGFFYPLNWLEIIFNPSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEEECHHHHHHEECCCC
PYRFFHMITAAYLTTSFVIGGVASFYLLNNRYKEHAKIMLFMAVLMALIVAPIQIVIGDL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLNTLKYQPVKVSAMEGIWNTDKGVAFNLIGFPDGEEEKTKYAVEIPYASSLILTHSLD
CCCCCCEECCEEEEHHCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEECCC
GEVKGLKEWTKEERPPVAVVFFSFRIMVGIGCLMVFIGIVGLYLYLKKRLYTTHWFQYWY
CCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
ILMSPSGFIAVLAGWFVTEVGRQPYIVYNILKTVDTVSPVLGKYVFISLIAFIVVYVIIF
EEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAGIYYIMHLIKKGIEVIENKEMYGESGLNNPLVEK
HHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]