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The map label for this gene is yrbE [C]

Identifier: 229586334

GI number: 229586334

Start: 125364

End: 126143

Strand: Direct

Name: yrbE [C]

Synonym: RAF_ORF0119

Alternate gene names: 229586334

Gene position: 125364-126143 (Clockwise)

Preceding gene: 229586333

Following gene: 229586335

Centisome position: 9.81

GC content: 37.44

Gene sequence:

>780_bases
ATGTTATTCAATATAGCTAATTCGGTCGGTAAACGTACTGTAAAGTTTGCACAAAGTGTAGGTAGTTTTTCTCTATTTAG
CTTTGCTGCCGTTAGCAGTATCATAAGACCGCCTTTATATTTGAGTTTAATTATCAGACAATTATTATTTATCGGGTTTC
ACTCGCTTCCGGTTGTTGCGATGACGACTTTTTTCTCAGGGGCGGTACTTGCATTACAGAGCTATATCGGTTTTTCCCGT
TTCTCAGCTGAAAGCTCTATTGCAACGGTAGTAGTATTGTCGCTGACTAGAGAGCTTGGACCTGTCTTAGCTGGACTAAT
GGTAGCGGGAAGAGTTGGGGCATCAATCGCCGCCGAAATAGCCACAATGAGAGTAACGGAGCAGATAGATGCTTTATATA
CTTTATCTACCGATCCTATTAAATATTTAGTTTTTCCAAGAGTAATAACAGCTATTATTACAATGCCTTGTCTTGTTTTA
ATCGGGGATATAATTGGTGTTATGGGCGGTTATTTGGTAGGGGTATATAAACTTGATTTTAATAGTGCAGCTTATTTAAC
CAGTACTTTTCAGTATTTAGAACCGATTGACGTAATTTCCGGTCTTGTTAAAGCGGGAGTTTTTGGGTTTATTATTTCTA
TAATAAGTTGCTATAGCGGCTATTATTCAGGTAAAGGGGCTAAGGGAGTTGGAAGAGCAACTACCTCGGCAGTAGTGAAT
TCTTCTATCCTTATCTTAATCAGTAATTATTTAATAACCGAATTATTTTTTAAAGTATAG

Upstream 100 bases:

>100_bases
GGATCCCGCGATCAAGTCGCGGGGATGACATTAGAGGTTACTGGATTCCTGCTTGCGCAGAAATGACATAGCGTACTTAA
ATTAAGTAGAAAAAATACAA

Downstream 100 bases:

>100_bases
GTTATACTCGTTTGATTTGAAAAATTGGTTTTGTTGTTTTATATTTTTTGACCGCAGCGTACATAAACGTACGTGAGGAT
CAAAAAATATAAAACGCCTA

Product: ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MLFNIANSVGKRTVKFAQSVGSFSLFSFAAVSSIIRPPLYLSLIIRQLLFIGFHSLPVVAMTTFFSGAVLALQSYIGFSR
FSAESSIATVVVLSLTRELGPVLAGLMVAGRVGASIAAEIATMRVTEQIDALYTLSTDPIKYLVFPRVITAIITMPCLVL
IGDIIGVMGGYLVGVYKLDFNSAAYLTSTFQYLEPIDVISGLVKAGVFGFIISIISCYSGYYSGKGAKGVGRATTSAVVN
SSILILISNYLITELFFKV

Sequences:

>Translated_259_residues
MLFNIANSVGKRTVKFAQSVGSFSLFSFAAVSSIIRPPLYLSLIIRQLLFIGFHSLPVVAMTTFFSGAVLALQSYIGFSR
FSAESSIATVVVLSLTRELGPVLAGLMVAGRVGASIAAEIATMRVTEQIDALYTLSTDPIKYLVFPRVITAIITMPCLVL
IGDIIGVMGGYLVGVYKLDFNSAAYLTSTFQYLEPIDVISGLVKAGVFGFIISIISCYSGYYSGKGAKGVGRATTSAVVN
SSILILISNYLITELFFKV
>Mature_259_residues
MLFNIANSVGKRTVKFAQSVGSFSLFSFAAVSSIIRPPLYLSLIIRQLLFIGFHSLPVVAMTTFFSGAVLALQSYIGFSR
FSAESSIATVVVLSLTRELGPVLAGLMVAGRVGASIAAEIATMRVTEQIDALYTLSTDPIKYLVFPRVITAIITMPCLVL
IGDIIGVMGGYLVGVYKLDFNSAAYLTSTFQYLEPIDVISGLVKAGVFGFIISIISCYSGYYSGKGAKGVGRATTSAVVN
SSILILISNYLITELFFKV

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=258, Percent_Identity=34.4961240310078, Blast_Score=157, Evalue=5e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 27685; Mature: 27685

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA