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The map label for this gene is 229586256

Identifier: 229586256

GI number: 229586256

Start: 29608

End: 30129

Strand: Direct

Name: 229586256

Synonym: RAF_ORF0028

Alternate gene names: NA

Gene position: 29608-30129 (Clockwise)

Preceding gene: 229586249

Following gene: 229586262

Centisome position: 2.32

GC content: 35.25

Gene sequence:

>522_bases
ATGGCAAATACAATACAATCCGAACAAAAATCTGAGTTTAAAATAGGGCAGAGAATTGTCTATCCTGCACATGGAGTTGG
TGAAATAACAAATATAGAATATCATACTATTGCAGGTACTGAAATTAAAGTATATGTAATTTCCTTTTCGCAGGATAAAA
TGACATTAAAAGTGCCTGTTAGTAGAGCTGCGGTTGTTGGTCTTAGAGCGGTTGCAAGCAGAAAAGATTTAGATGTCATA
TATTCAACTCTTCAAGGTAAACCAAAACAAGGAAATAGAATGTGGAGTAGAAGAGCCCAAGAATATGAAGGCAAAATTAA
CTCAGGTAATATTGTAGCTATAGCCGAAGTATTACGGGACTTACATAAAAATGTTGATAATGATCGTTCTTATAGTGAAA
GAACACTCTACGAATCAGCTTTAAATAGACTTGCAGGCGAGCTTGCTATCCTTGAAAACATCCACCCAACCGAAGCAATT
AATAAGTTAGTTGAAGTACTGCGTGAAAAATTAGTAGCATAG

Upstream 100 bases:

>100_bases
AATCTCTACTTTATAATAAAAGCAAAATGTGCTATGCTATAGAAAATAATAGTCTAACATTAAGTTCTTAGGCACTAAAA
CCACTACGGAGGAATTAATA

Downstream 100 bases:

>100_bases
TTATACTCGTTCAACTTGAAAAATTGACTGTGTCGTCTTTGTAAGTCCTCGGATGCTCACGTATTAAAAGTATACGCTCT
GCTCCTCGGCTTACAGGCTC

Product: Transcriptional regulator

Products: NA

Alternate protein names: CarD Family Transcriptional Regulator; Transcriptional Regulator; Transcription Factor CarD; Transcription Factor; CarD-Like Transcriptional Regulator; Transcriptional Factor Regulator; Transcriptional Regulator Card Family; Transcriptional Regulator CarD Family Protein; Transcription Regulator CarD; CarD-Like Transcriptional Regulator Family; CarD-Family Transcriptional Regulator; CarD Transcriptional Regulator-Like Protein; Transcriptional Regulator Protein CarD Family; Transcription Factor Regulator; CarD-Like Transcriptional Regulator Protein; CarD-Like Protein; Transcriptional Regulatory Protein; CarD Transcriptional Regulator; Transcription Factor Protein; Transcriptional Regulator CarD-Like Regulator; Transcriptional Regulator CarD; CarD-Like Transcriptional Regulator Family Protein; Transcriptional Regulator Of CarD Family; CarD-Like Transcriptional Factor; Transcriptional Regulator Card Domain Protein

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MANTIQSEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPVSRAAVVGLRAVASRKDLDVI
YSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLHKNVDNDRSYSERTLYESALNRLAGELAILENIHPTEAI
NKLVEVLREKLVA

Sequences:

>Translated_173_residues
MANTIQSEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPVSRAAVVGLRAVASRKDLDVI
YSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLHKNVDNDRSYSERTLYESALNRLAGELAILENIHPTEAI
NKLVEVLREKLVA
>Mature_172_residues
ANTIQSEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPVSRAAVVGLRAVASRKDLDVIY
STLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRDLHKNVDNDRSYSERTLYESALNRLAGELAILENIHPTEAIN
KLVEVLREKLVA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19407; Mature: 19276

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANTIQSEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPV
CCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCEEEEECCCEEEEEEEEECCCCEEEEECC
SRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRD
HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHH
LHKNVDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREKLVA
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ANTIQSEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYVISFSQDKMTLKVPV
CCCCCCHHHHHHHHCCEEEECCCCCCCCCCCEEEEECCCEEEEEEEEECCCCEEEEECC
SRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWSRRAQEYEGKINSGNIVAIAEVLRD
HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHH
LHKNVDNDRSYSERTLYESALNRLAGELAILENIHPTEAINKLVEVLREKLVA
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA