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The map label for this gene is rfbA [H]

Identifier: 229586234

GI number: 229586234

Start: 2118

End: 2894

Strand: Direct

Name: rfbA [H]

Synonym: RAF_ORF0004

Alternate gene names: 229586234

Gene position: 2118-2894 (Clockwise)

Preceding gene: 229586233

Following gene: 229586235

Centisome position: 0.17

GC content: 28.83

Gene sequence:

>777_bases
ATGATAAAGTATTTTTTTTCTAAAAAATACTGGCGAGCAATAGCATTACTAGTTAAAGCTTCTATAATTAGGCAAAATAA
AGATTCTTTTTTAGGTTCTTTATGGAGTTTAATTCAGCCTTTTATTCACATAATGGTAATTTCATATTTTTTCGGTTTTT
TATTAAGACAGCCGAGAGAATTTATGGTAATGAATTTAGTCGGCGGTATTCCTTTGTGGAGTTTTATAGTAAGCAGTTTA
ACGATTTGTTCAAGTTCTTTAGTTACACGTGATCAAATAATAAAAAAAGTTAGAATTTCTAAGACTTTTTTTCCTGTTGC
GGATAGTTTAGGGCAATTATATACTTTAATTTGCTCATTTTCGGCAATGTATTTTGCTTTTATTTTATTATTTCCAGAAA
AATTTTCTTGGCAAATAATATTTATGCCGATATTAATTTTGCCCTTAATAATATGTGTGATTAGCGGTTCTATCGCAGTA
GCATTTTTAACGCCGTATATTCGAGATATTCCGCAAATGTTGAGTGTTATTCTTGGAGTTATTTATTGGAGTATACCGAT
AGTTTATCCATATTCGCTAATTCCGGAGTCTAAAAAGATATATTTTGAATTTAATCCGTTCTTTTTAGTTATAAGACCCG
TACAAGCGTTGGTGATTGACGGAACATTACCGGATATGATGCTGATAGTTAAGTCTATTATAGTTGCATTTATTACTGTT
TGTATCAGTTATTTAATTTATAGACAATTTTCTAAAAGAGTTATTTATTATTTATGA

Upstream 100 bases:

>100_bases
TTGCAATAGATGTATTTTATTAAAAGACGGCAATATTATAGGTGATGGTACACCATCGGAAATGTTTAAAATCTATAACC
AACAACAAGGAAATTCATAA

Downstream 100 bases:

>100_bases
AACTTGGTTTTAATCTAGATTTTAATGAATTAGATTTAACCGGACTTAAAAAATTAGATCAAATATTTTTAGATTATCTC
TTTAAAGCTGATAGATCTTT

Product: O-antigen export system permease protein RfbA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MIKYFFSKKYWRAIALLVKASIIRQNKDSFLGSLWSLIQPFIHIMVISYFFGFLLRQPREFMVMNLVGGIPLWSFIVSSL
TICSSSLVTRDQIIKKVRISKTFFPVADSLGQLYTLICSFSAMYFAFILLFPEKFSWQIIFMPILILPLIICVISGSIAV
AFLTPYIRDIPQMLSVILGVIYWSIPIVYPYSLIPESKKIYFEFNPFFLVIRPVQALVIDGTLPDMMLIVKSIIVAFITV
CISYLIYRQFSKRVIYYL

Sequences:

>Translated_258_residues
MIKYFFSKKYWRAIALLVKASIIRQNKDSFLGSLWSLIQPFIHIMVISYFFGFLLRQPREFMVMNLVGGIPLWSFIVSSL
TICSSSLVTRDQIIKKVRISKTFFPVADSLGQLYTLICSFSAMYFAFILLFPEKFSWQIIFMPILILPLIICVISGSIAV
AFLTPYIRDIPQMLSVILGVIYWSIPIVYPYSLIPESKKIYFEFNPFFLVIRPVQALVIDGTLPDMMLIVKSIIVAFITV
CISYLIYRQFSKRVIYYL
>Mature_258_residues
MIKYFFSKKYWRAIALLVKASIIRQNKDSFLGSLWSLIQPFIHIMVISYFFGFLLRQPREFMVMNLVGGIPLWSFIVSSL
TICSSSLVTRDQIIKKVRISKTFFPVADSLGQLYTLICSFSAMYFAFILLFPEKFSWQIIFMPILILPLIICVISGSIAV
AFLTPYIRDIPQMLSVILGVIYWSIPIVYPYSLIPESKKIYFEFNPFFLVIRPVQALVIDGTLPDMMLIVKSIIVAFITV
CISYLIYRQFSKRVIYYL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29927; Mature: 29927

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]