Click here to switch to the map view.

The map label for this gene is fdhD [H]

Identifier: 227828718

GI number: 227828718

Start: 2300737

End: 2301504

Strand: Direct

Name: fdhD [H]

Synonym: M1425_2476

Alternate gene names: 227828718

Gene position: 2300737-2301504 (Clockwise)

Preceding gene: 227828717

Following gene: 227828719

Centisome position: 88.19

GC content: 36.07

Gene sequence:

>768_bases
GTGCAAGTAAAGAGGTTTAACTTAGTAAGGGTTAAGGAGAATGAGGAATATAAGGATAGCGATTTCGTTGCAGTAGAGGA
ACCATTAAATATAAGGGTTTGTTTTGAAAAGTGTGAAGATTTCGCCATAATAATGAGAACACCAGGGGATGATAAAGAGC
TTTCCTTAGGTTTTTTATATTCTGAAGGTGTAATAAACTCTATTCATGACGTTGAGAGTATTGAGCAAGTGAAGAATAAT
GCTGTCGAGGTTAGATTAAATAAGCCAGTTAAAGTAAGAATAAGGGACTTAATTGTAAATTCAAGTTGTGGAGTTTGTGG
TAGAGCTTTTCTATATACGTTAAATATACTTAAATCGGATCTGAAAGTTAAAAAAGAGCTGATTTTCTCGTTTCCAGAAA
AATTGAGGGAGAAACAGAGTGTGTTTAACATTAGCGGAGGTCTCCACGCTACGGCGTTATTTGATCCTCACGGAGAATTA
TTGCTTATATATGAGGATGTGGGGAGACATAATGCTGTTGATAAGGTAGTTGGTAAACTTCTATTAGAGGATAAGGTTCC
AGCAAGTAATTACATTATGCAAGTTAGCGGAAGATTAGGATATGAGATCGTTAGCAAAGGGATAAAAGCGGGAATACCGA
TAGTATGTGGAATTTCAGCTCCTACTAGCCTAGCTATTGAAATTGCCGAAGAAGCTGGACTAACTCTTATAGGTTTTCTA
CGGGGAAAAAGTTTCAACATTTACACTCATGATGAAAGAATATATTAG

Upstream 100 bases:

>100_bases
GCTAAGGATATTAGTTTAACTGAATTAATTAAACAGCTTAACGACCCAGACGTAAAGAGAGGACTATATTTATTACTAAA
GATACTTAAGGCGATTGGAA

Downstream 100 bases:

>100_bases
ATGATAACTTTTTAACATTATTAATAGGTAGTATTTTAAACCTATCTATCAAAATGTAACTTATGAATTATACATACTTG
CTAGAGGAAGTTAGTTTATC

Product: formate dehydrogenase family accessory protein FdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MQVKRFNLVRVKENEEYKDSDFVAVEEPLNIRVCFEKCEDFAIIMRTPGDDKELSLGFLYSEGVINSIHDVESIEQVKNN
AVEVRLNKPVKVRIRDLIVNSSCGVCGRAFLYTLNILKSDLKVKKELIFSFPEKLREKQSVFNISGGLHATALFDPHGEL
LLIYEDVGRHNAVDKVVGKLLLEDKVPASNYIMQVSGRLGYEIVSKGIKAGIPIVCGISAPTSLAIEIAEEAGLTLIGFL
RGKSFNIYTHDERIY

Sequences:

>Translated_255_residues
MQVKRFNLVRVKENEEYKDSDFVAVEEPLNIRVCFEKCEDFAIIMRTPGDDKELSLGFLYSEGVINSIHDVESIEQVKNN
AVEVRLNKPVKVRIRDLIVNSSCGVCGRAFLYTLNILKSDLKVKKELIFSFPEKLREKQSVFNISGGLHATALFDPHGEL
LLIYEDVGRHNAVDKVVGKLLLEDKVPASNYIMQVSGRLGYEIVSKGIKAGIPIVCGISAPTSLAIEIAEEAGLTLIGFL
RGKSFNIYTHDERIY
>Mature_255_residues
MQVKRFNLVRVKENEEYKDSDFVAVEEPLNIRVCFEKCEDFAIIMRTPGDDKELSLGFLYSEGVINSIHDVESIEQVKNN
AVEVRLNKPVKVRIRDLIVNSSCGVCGRAFLYTLNILKSDLKVKKELIFSFPEKLREKQSVFNISGGLHATALFDPHGEL
LLIYEDVGRHNAVDKVVGKLLLEDKVPASNYIMQVSGRLGYEIVSKGIKAGIPIVCGISAPTSLAIEIAEEAGLTLIGFL
RGKSFNIYTHDERIY

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=232, Percent_Identity=33.1896551724138, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 28578; Mature: 28578

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVKRFNLVRVKENEEYKDSDFVAVEEPLNIRVCFEKCEDFAIIMRTPGDDKELSLGFLY
CCCEEEEEEEEECCCCCCCCCCEEECCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEE
SEGVINSIHDVESIEQVKNNAVEVRLNKPVKVRIRDLIVNSSCGVCGRAFLYTLNILKSD
CCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
LKVKKELIFSFPEKLREKQSVFNISGGLHATALFDPHGELLLIYEDVGRHNAVDKVVGKL
HHHHHHHHHHHHHHHHHHHHEEEECCCEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHH
LLEDKVPASNYIMQVSGRLGYEIVSKGIKAGIPIVCGISAPTSLAIEIAEEAGLTLIGFL
HHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCEEEEEHHHCCCEEEEEE
RGKSFNIYTHDERIY
CCCEEEEEECCCCCC
>Mature Secondary Structure
MQVKRFNLVRVKENEEYKDSDFVAVEEPLNIRVCFEKCEDFAIIMRTPGDDKELSLGFLY
CCCEEEEEEEEECCCCCCCCCCEEECCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEE
SEGVINSIHDVESIEQVKNNAVEVRLNKPVKVRIRDLIVNSSCGVCGRAFLYTLNILKSD
CCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
LKVKKELIFSFPEKLREKQSVFNISGGLHATALFDPHGELLLIYEDVGRHNAVDKVVGKL
HHHHHHHHHHHHHHHHHHHHEEEECCCEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHH
LLEDKVPASNYIMQVSGRLGYEIVSKGIKAGIPIVCGISAPTSLAIEIAEEAGLTLIGFL
HHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCEEEEEHHHCCCEEEEEE
RGKSFNIYTHDERIY
CCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726 [H]