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The map label for this gene is soxC [H]

Identifier: 227828628

GI number: 227828628

Start: 2210291

End: 2211832

Strand: Direct

Name: soxC [H]

Synonym: M1425_2381

Alternate gene names: 227828628

Gene position: 2210291-2211832 (Clockwise)

Preceding gene: 227828627

Following gene: 227828629

Centisome position: 84.72

GC content: 39.17

Gene sequence:

>1542_bases
GTGGTTAGCATGGTAGATGAGCAAAAGGCTGGTTTATTCGATAGATTTATGAAATGGTTAGATGATAGGTTAGGAATTTA
CGGGCATACTTTAAGACCTGCGCCTAGATATGCTTACTCGATAGATTATTGGCTAGGAGGGCTGGTATTATCAGCGTTCA
TACTCGAAGTAATAACTGGTGCTTTAGTTGCACTTTACTATACGCCAAGCGATCCATACACATCAACCACTTATTTAATA
AGTAAAATACCGTACGGTGCCTTATTATTTAGTCTTCATAGCTGGGGAGCTTACGCCATGGTCTTCTTATTGTTAGTTCA
CATGACCAGAAACTTCTTTGTAGGAGCTTATAGACAACCAAGAGAAATAATGTGGGTAGTTGGAGCTGGATTAGCTGGCT
TAACATTAACTGAGGCTTATTTAGGATATTCACTACCTTACAACTTGATCTCATGGGTTGCAACAACTACTGGGCTAAAC
TTATTCTCATACATGCCATTTAACTTAGGTTATCTAATTTCACTATTTACTGTAGTAAATCCCGATCAACCCGGTATAAT
GTCTGGTGTGGATCCTCTAGTACAAAGATTCTTCGTGTTTCACTGGATAGTAGGTGGATTAATTCTAGCGCTTATAGGTC
TACATCTTTACATATTTGAAAAACATGGCATAACTCCGCCAGTATCTCAAGTTAAGCCAGGCTACCCCGAGCTAATAGAC
GAATACCAAGATAAGGTAAGGTCTGATCCCAAATGGGAGCTTCAACCATTAATGAGGTCTATAGGGATGGTGATAATGGT
ATTCCTACTAACCTTTGGTGCGATATTTCTGATAGCAGGGGCGATACCGTTTAACATTACTATTACCGGTGGTACTCCTA
AATATATAATGCCTGCATTTAACCCAGTGGAAGCTGCGCAAACTCCACCAGTCCCTGACTGGTACTTCTTATTCATTTAT
TTCTTCTACAAGGCAGTAAGTCCAACTAATGCCTCTCTAATATTCCTAGGCTGGGTTGTAGTTACTGTGCTATTTCCATT
TATAGAGGAATATATATTTAGGCATAAGGCTCCACATCCAGCATTAAGGCCAGCGTCTATTGCAATAGGTAGTGGTTTCA
TTGTCAGCTTTATAGTTAACAGTGTTTGGGCAGCTTTAACACCCGGAAGAGATATTGGACCGATAGGAGTTGAGGTTGAC
GGTATTATTTTCCTAGTTTGTTTTGCAGTGATTTGGCCATTATTAAGATATGTTGCGCAACCTAGAGTTTTAGCTAAATG
GCAGAGTTCTCCATTAACTGATGGAGGTGTGGTAATTGAGTATAAGGAAAGGAGGATATTAAGTGGGCTAGCAGTACTGC
TGATTAACGTGTCTATACTAGGTGGGCTAATATATTCTCTATATGAGGTGTTTTCACTTTCAAGCAATCCCATGATTAAC
CAATTTTTAATAGGTCAATTTTTAGGTACTTCCCTAATTTTGTTTTCGATCTCAATTTTCATAAACGTGGTGATGGGGAT
TGGAAAAAGCCAGGATATTTGA

Upstream 100 bases:

>100_bases
TATTTCAGTGCATCAATACCCAGAACTACCCCATCTGATAACTTGCTTTACGATCCTAGATATGACTATAGCGTACCTTC
TAATCCGTCTTGCAGCAAGG

Downstream 100 bases:

>100_bases
ACTGTCAACTATAGTATTTGCAATTGTAATCTTAACAGTTCTGGGCATTTTTTCAGATATCTATCTGAATTCAATAAACA
CTGGAGCCTATCTATCAACT

Product: cytochrome b/b6 domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MVSMVDEQKAGLFDRFMKWLDDRLGIYGHTLRPAPRYAYSIDYWLGGLVLSAFILEVITGALVALYYTPSDPYTSTTYLI
SKIPYGALLFSLHSWGAYAMVFLLLVHMTRNFFVGAYRQPREIMWVVGAGLAGLTLTEAYLGYSLPYNLISWVATTTGLN
LFSYMPFNLGYLISLFTVVNPDQPGIMSGVDPLVQRFFVFHWIVGGLILALIGLHLYIFEKHGITPPVSQVKPGYPELID
EYQDKVRSDPKWELQPLMRSIGMVIMVFLLTFGAIFLIAGAIPFNITITGGTPKYIMPAFNPVEAAQTPPVPDWYFLFIY
FFYKAVSPTNASLIFLGWVVVTVLFPFIEEYIFRHKAPHPALRPASIAIGSGFIVSFIVNSVWAALTPGRDIGPIGVEVD
GIIFLVCFAVIWPLLRYVAQPRVLAKWQSSPLTDGGVVIEYKERRILSGLAVLLINVSILGGLIYSLYEVFSLSSNPMIN
QFLIGQFLGTSLILFSISIFINVVMGIGKSQDI

Sequences:

>Translated_513_residues
MVSMVDEQKAGLFDRFMKWLDDRLGIYGHTLRPAPRYAYSIDYWLGGLVLSAFILEVITGALVALYYTPSDPYTSTTYLI
SKIPYGALLFSLHSWGAYAMVFLLLVHMTRNFFVGAYRQPREIMWVVGAGLAGLTLTEAYLGYSLPYNLISWVATTTGLN
LFSYMPFNLGYLISLFTVVNPDQPGIMSGVDPLVQRFFVFHWIVGGLILALIGLHLYIFEKHGITPPVSQVKPGYPELID
EYQDKVRSDPKWELQPLMRSIGMVIMVFLLTFGAIFLIAGAIPFNITITGGTPKYIMPAFNPVEAAQTPPVPDWYFLFIY
FFYKAVSPTNASLIFLGWVVVTVLFPFIEEYIFRHKAPHPALRPASIAIGSGFIVSFIVNSVWAALTPGRDIGPIGVEVD
GIIFLVCFAVIWPLLRYVAQPRVLAKWQSSPLTDGGVVIEYKERRILSGLAVLLINVSILGGLIYSLYEVFSLSSNPMIN
QFLIGQFLGTSLILFSISIFINVVMGIGKSQDI
>Mature_513_residues
MVSMVDEQKAGLFDRFMKWLDDRLGIYGHTLRPAPRYAYSIDYWLGGLVLSAFILEVITGALVALYYTPSDPYTSTTYLI
SKIPYGALLFSLHSWGAYAMVFLLLVHMTRNFFVGAYRQPREIMWVVGAGLAGLTLTEAYLGYSLPYNLISWVATTTGLN
LFSYMPFNLGYLISLFTVVNPDQPGIMSGVDPLVQRFFVFHWIVGGLILALIGLHLYIFEKHGITPPVSQVKPGYPELID
EYQDKVRSDPKWELQPLMRSIGMVIMVFLLTFGAIFLIAGAIPFNITITGGTPKYIMPAFNPVEAAQTPPVPDWYFLFIY
FFYKAVSPTNASLIFLGWVVVTVLFPFIEEYIFRHKAPHPALRPASIAIGSGFIVSFIVNSVWAALTPGRDIGPIGVEVD
GIIFLVCFAVIWPLLRYVAQPRVLAKWQSSPLTDGGVVIEYKERRILSGLAVLLINVSILGGLIYSLYEVFSLSSNPMIN
QFLIGQFLGTSLILFSISIFINVVMGIGKSQDI

Specific function: Binds 2 heme groups (b586 and b606) which are not covalently bound to the protein [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=315, Percent_Identity=25.7142857142857, Blast_Score=82, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6226529, Length=320, Percent_Identity=26.5625, Blast_Score=91, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6226532, Length=200, Percent_Identity=30.5, Blast_Score=89, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6226531, Length=202, Percent_Identity=27.7227722772277, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57239; Mature: 57239

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS51002 CYTB_NTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1372250 [H]