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The map label for this gene is rpl18e [H]

Identifier: 227828308

GI number: 227828308

Start: 1880702

End: 1881061

Strand: Direct

Name: rpl18e [H]

Synonym: M1425_2049

Alternate gene names: 227828308

Gene position: 1880702-1881061 (Clockwise)

Preceding gene: 227828307

Following gene: 227828309

Centisome position: 72.09

GC content: 34.17

Gene sequence:

>360_bases
ATGAAGGTAACTGGTAGTACGAATATAATGGTTAGAAAGCTTATCAGAAATTTGGAAAAGTCTAAGAAACCATTGTGGAG
AAAAGTAGCTGAAGAGTTATCGGCATCATCCAGAAAGAGGCCATATATTAACCTATACAAAATAAACAAGTACACTAAGC
CCAATGACATAGTTGTTGTTCCAGGAAAAGTCTTAGGTATAGGTAAACTAGATCACGTAGTAACAGTTATTGCATTGGAT
TTCTCAAAATCCGCTATAGAAAAAATTAGAGCTTCGGGAGGTCAGACTATGAGTATATATAAAGCTTTAGAAACCTTTAA
GGATTTTAAAGGAAAAAATGTGAGGTTGATGAAGCAATGA

Upstream 100 bases:

>100_bases
GTGTTGGATCTCTTAAGCCAGAGAGAATTTTATTAGAGGCTGGTAAAAGCATTATTAGAAAGATTGAAGAATTAGAGAAG
AAGCTAGTAGAGGTGATTAA

Downstream 100 bases:

>100_bases
GTACGCAAGTTCAAGAGCAAGAAGTAGTAATTAACGCTGAAGGTCAGATCTTAGGTAGAATGGCGAGTAACATAGTTAGA
TTATTAAAGGAAGGTAAAAA

Product: 50S ribosomal protein L18e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MKVTGSTNIMVRKLIRNLEKSKKPLWRKVAEELSASSRKRPYINLYKINKYTKPNDIVVVPGKVLGIGKLDHVVTVIALD
FSKSAIEKIRASGGQTMSIYKALETFKDFKGKNVRLMKQ

Sequences:

>Translated_119_residues
MKVTGSTNIMVRKLIRNLEKSKKPLWRKVAEELSASSRKRPYINLYKINKYTKPNDIVVVPGKVLGIGKLDHVVTVIALD
FSKSAIEKIRASGGQTMSIYKALETFKDFKGKNVRLMKQ
>Mature_119_residues
MKVTGSTNIMVRKLIRNLEKSKKPLWRKVAEELSASSRKRPYINLYKINKYTKPNDIVVVPGKVLGIGKLDHVVTVIALD
FSKSAIEKIRASGGQTMSIYKALETFKDFKGKNVRLMKQ

Specific function: Unknown

COG id: COG1727

COG function: function code J; Ribosomal protein L18E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005749
- InterPro:   IPR001196
- InterPro:   IPR021131
- InterPro:   IPR022947
- InterPro:   IPR021132 [H]

Pfam domain/function: PF00828 Ribosomal_L18e [H]

EC number: NA

Molecular weight: Translated: 13494; Mature: 13494

Theoretical pI: Translated: 11.05; Mature: 11.05

Prosite motif: PS00475 RIBOSOMAL_L15 ; PS01106 RIBOSOMAL_L18E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVTGSTNIMVRKLIRNLEKSKKPLWRKVAEELSASSRKRPYINLYKINKYTKPNDIVVV
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEE
PGKVLGIGKLDHVVTVIALDFSKSAIEKIRASGGQTMSIYKALETFKDFKGKNVRLMKQ
CCCEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MKVTGSTNIMVRKLIRNLEKSKKPLWRKVAEELSASSRKRPYINLYKINKYTKPNDIVVV
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEE
PGKVLGIGKLDHVVTVIALDFSKSAIEKIRASGGQTMSIYKALETFKDFKGKNVRLMKQ
CCCEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]