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The map label for this gene is rpoM [H]

Identifier: 227828074

GI number: 227828074

Start: 1677034

End: 1677369

Strand: Direct

Name: rpoM [H]

Synonym: M1425_1811

Alternate gene names: 227828074

Gene position: 1677034-1677369 (Clockwise)

Preceding gene: 227828073

Following gene: 227828075

Centisome position: 64.28

GC content: 37.5

Gene sequence:

>336_bases
ATGAAGTTCTGTCCCAAATGTAACTCTATGATGGTCCCAAAGAAATCCAATGGTAAGAACACATATAGATGCACGAAATG
TGGTTATGAAGAGGAGGTTCCAGAGACAACAATAGTAGTGACAAGCAAAGTAAAACACAGTATTAAAGAAAAAACGTTAA
TATTAGAGGAGGAGGAAATGCCCAGTGGGGCTCAAAAAATAAAAGGTGTTCTATGTCCTTCATGTAAAAATGACGAAGCC
TACTTCTGGATATTGCAAACTAGAAGGGCAGATGAGCCACCAACTAGATTTTATAAGTGCACAAAATGTGGTAAAGTATG
GAGAGAGTACGAATAA

Upstream 100 bases:

>100_bases
AGAACAAGAACCAGAGAAAATATGTGAAAATCTCATAAAGAAACTATCAGAAAAGTTAAATATAGATAAAGTAAATGGTT
AAGCTTGTAGCGTGGTATTA

Downstream 100 bases:

>100_bases
AAGAATGAGAAAATCTTATTTTATTGAATTCTCATTTTATGTTGGACCCGTAGCTCAGCCAGGACGGAGCGCCGGCCTTC
TAGCGTCTAAGGGGGATAGC

Product: transcription termination factor Tfs

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MKFCPKCNSMMVPKKSNGKNTYRCTKCGYEEEVPETTIVVTSKVKHSIKEKTLILEEEEMPSGAQKIKGVLCPSCKNDEA
YFWILQTRRADEPPTRFYKCTKCGKVWREYE

Sequences:

>Translated_111_residues
MKFCPKCNSMMVPKKSNGKNTYRCTKCGYEEEVPETTIVVTSKVKHSIKEKTLILEEEEMPSGAQKIKGVLCPSCKNDEA
YFWILQTRRADEPPTRFYKCTKCGKVWREYE
>Mature_111_residues
MKFCPKCNSMMVPKKSNGKNTYRCTKCGYEEEVPETTIVVTSKVKHSIKEKTLILEEEEMPSGAQKIKGVLCPSCKNDEA
YFWILQTRRADEPPTRFYKCTKCGKVWREYE

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1594

COG function: function code K; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TFIIS-type zinc finger [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6320250, Length=110, Percent_Identity=35.4545454545455, Blast_Score=63, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24646802, Length=113, Percent_Identity=35.3982300884956, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019761
- InterPro:   IPR001529
- InterPro:   IPR006288
- InterPro:   IPR001222 [H]

Pfam domain/function: PF02150 RNA_POL_M_15KD; PF01096 TFIIS_C [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 12911; Mature: 12911

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00466 ZF_TFIIS_1 ; PS51133 ZF_TFIIS_2 ; PS01030 RNA_POL_M_15KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
10.8 %Cys+Met (Translated Protein)
7.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
10.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFCPKCNSMMVPKKSNGKNTYRCTKCGYEEEVPETTIVVTSKVKHSIKEKTLILEEEEM
CCCCCCCCCEECCCCCCCCCCEEEECCCCCCCCCCEEEEEEHHHHHHHHHHEEEEECCCC
PSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKCTKCGKVWREYE
CCCHHHHCCEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKFCPKCNSMMVPKKSNGKNTYRCTKCGYEEEVPETTIVVTSKVKHSIKEKTLILEEEEM
CCCCCCCCCEECCCCCCCCCCEEEECCCCCCCCCCEEEEEEHHHHHHHHHHEEEEECCCC
PSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKCTKCGKVWREYE
CCCHHHHCCEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8502569 [H]