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The map label for this gene is rpl10e

Identifier: 227828069

GI number: 227828069

Start: 1674369

End: 1674905

Strand: Direct

Name: rpl10e

Synonym: M1425_1806

Alternate gene names: 227828069

Gene position: 1674369-1674905 (Clockwise)

Preceding gene: 227828068

Following gene: 227828070

Centisome position: 64.18

GC content: 37.06

Gene sequence:

>537_bases
ATGCCACTACGACCTGGAAGATGTTATAGACATTTCTCCGGTCCTGCATATACCAGGAAAGAATACATCCCTGGTATTCC
ACAACCAAAGATAACTAAATTTACATCTGGAAATCCAAATGGAGATTATGACTATGAAGTTAGGTTAATTACTACTGAGA
TAGGGCAAATAAGGCATAATGCTTTGGAAGCTGTTAGGACTATTACTCTAAAGACATTAACTAAGAGAACTGGAAGTGAA
ACTTCGTTCTTTATGTGGATCTTAAAGTACCCCCATCATGTATTAAGAGAGAATAAAATGATGGCGTTTGCTGGAGCTGA
TAGATTACAGGACGGAATGAGATTGTCTTTTGGTACACCAATTGGTACTGCTGCTAGGATTGAAAAATTAGGAGAAATTT
TAATTGTAGTAAAAGTTAAGAAGGAACATCTAGACTTCGCAAAAGAGGCGTTAAAGATAGCATCAAAGAAGTTACCTTTG
CGTACTAGAATTGAGATCATTCCATTAAGGCCCATAAGACAGGAGGTTCAAAGTTGA

Upstream 100 bases:

>100_bases
CGGACGAGATATTAGCGCATATAAAGGCACTTCAATCGTCATTTGATGCTATAAGTTAAATATTTAGTCTTTAATACAAA
AGTCTATATCGTGAGGTTAA

Downstream 100 bases:

>100_bases
ACTATAATTTTGAAGAAGAACGTGTAGTGAAGGAAATACGTGAAAAGGACGCAAAACGTGTTCTTTTACAATTTCCCGAA
GGATTGAAGTATTTTTCTAT

Product: 50S ribosomal protein L10e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPNGDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSE
TSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPL
RTRIEIIPLRPIRQEVQS

Sequences:

>Translated_178_residues
MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPNGDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSE
TSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPL
RTRIEIIPLRPIRQEVQS
>Mature_177_residues
PLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPNGDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSET
SFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLR
TRIEIIPLRPIRQEVQS

Specific function: Unknown

COG id: COG0197

COG function: function code J; Ribosomal protein L16/L10E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10e family

Homologues:

Organism=Homo sapiens, GI18152783, Length=169, Percent_Identity=36.6863905325444, Blast_Score=108, Evalue=2e-24,
Organism=Homo sapiens, GI223890243, Length=169, Percent_Identity=36.094674556213, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17533037, Length=164, Percent_Identity=37.1951219512195, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6323104, Length=167, Percent_Identity=37.125748502994, Blast_Score=107, Evalue=1e-24,
Organism=Drosophila melanogaster, GI221513696, Length=169, Percent_Identity=37.8698224852071, Blast_Score=107, Evalue=3e-24,
Organism=Drosophila melanogaster, GI221513692, Length=169, Percent_Identity=37.8698224852071, Blast_Score=107, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL10_SULIA (C3MZG3)

Other databases:

- EMBL:   CP001401
- RefSeq:   YP_002843840.1
- GeneID:   7812266
- GenomeReviews:   CP001401_GR
- KEGG:   sim:M1627_1924
- OMA:   YTRREYI
- ProtClustDB:   PRK04199
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00448
- InterPro:   IPR001197
- InterPro:   IPR016180
- InterPro:   IPR022981
- InterPro:   IPR018255
- PANTHER:   PTHR11726
- PIRSF:   PIRSF005590

Pfam domain/function: PF00252 Ribosomal_L16; SSF54686 Ribosomal_L10e/L16

EC number: NA

Molecular weight: Translated: 20387; Mature: 20256

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: PS01257 RIBOSOMAL_L10E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPNGDYDYEVRLITTEIGQIRHN
CCCCCCCHHHCCCCCCCCHHHHCCCCCCCCEEEECCCCCCCCCEEEEEEEEEHHHHHHHH
ALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHCCCEEEEECCHHHCCCCEEECCCC
IGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRIEIIPLRPIRQEVQS
CCHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHCC
>Mature Secondary Structure 
PLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPNGDYDYEVRLITTEIGQIRHN
CCCCCCHHHCCCCCCCCHHHHCCCCCCCCEEEECCCCCCCCCEEEEEEEEEHHHHHHHH
ALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHCCCEEEEECCHHHCCCCEEECCCC
IGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRIEIIPLRPIRQEVQS
CCHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA